Packages for Ubuntu 17.10 “Artful Aardvark” (artful)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
afni-data
aghermann
  • aghermann (Sleep-research experiment manager)
ants
  • ants (advanced normalization tools for brain and image analysis)
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)
btrfs-tools
citeproc-py
cmtk
  • cmtk (Computational Morphometry Toolkit)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
connectome-workbench
contextlib2
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
datalad
  • datalad (data files management and distribution platform)
  • python-datalad (data files management and distribution platform)
  • python3-datalad (data files management and distribution platform)
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debian-handbook
  • debian-handbook (reference book for Debian users and system administrators)
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)
dockerpty
duecredit
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)
freeipmi
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsleyes
fsleyes-props
fsleyes-widgets
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslpy
gcalcli
  • gcalcli (Google Calendar Command Line Interface)
gifticlib
  • gifti-bin (tools shipped with the GIFTI library)
  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)
  • libgiftiio0 (IO library for the GIFTI cortical surface data format)
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)
haskell-network-protocol-xmpp
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
impressive
  • impressive (PDF presentation tool with eye candies)
indexed-gzip
jasp
  • jasp (Bayesian statistics made accessible)
joblib
json-tricks
matlab-support
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mridefacer
neurodebian
nibabel
nipy
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
nosexcover
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
openpyxl
openstack-pkg-tools
p7zip
  • p7zip (7zr file archiver with high compression ratio)
  • p7zip-full (7z and 7za file archivers with high compression ratio)
pandas
patool
  • patool (command line archive file manager)
patsy
pprocess
props
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydot
pygithub
pyglet
  • python-pyglet (cross-platform windowing and multimedia library)
pymvpa2
pysurfer
pytest-tornado
python-argcomplete
python-boto
  • python-boto (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)
  • python3-docker (Python 3 wrapper to access docker.io’s control socket)
python-exif
  • python-exif (Python library to extract Exif data from TIFF and JPEG files)
  • python3-exif (Python library to extract Exif data from TIFF and JPEG files)
python-fasteners
python-funcsigs
python-future
  • python-future (single-source support for Python 3 and 2 - Python 2.x)
  • python-future-doc (Clean single-source support for Python 3 and 2 - doc)
  • python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-httpretty
python-humanize
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)
  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-monotonic
python-packaging
python-prov
python-py
  • pypy-py (Advanced Python development support library (PyPy))
  • python-py (Advanced Python development support library (Python 2))
  • python3-py (Advanced Python development support library (Python 3))
python-pydotplus
python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
python-pyperclip
python-rpaths
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-urllib3
python-w3lib
  • python-w3lib (Collection of web-related functions for Python (Python 2))
  • python3-w3lib (Collection of web-related functions for Python (Python 3))
python-werkzeug
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
python-xmp-toolkit
rclone
rdflib
  • python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)
  • python-rdflib-doc (Python library containing an RDF triple store [...] (documentation))
  • python-rdflib-tools (Python tools for converting to and from RDF)
  • python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)
remake
  • remake (GNU make fork with improved error reporting and debugging)
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)
  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)
scikit-learn
setuptools-scm
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
sphinx-rtd-theme
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
sympy
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)
  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))
  • python3-vcr (record and replay HTML interactions (Python3 library))
xlwt
  • python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
  • python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
  • python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)

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