Packages for Debian GNU/Linux 6.0 (squeeze)

• afni (toolkit for analyzing and visualizing functional MRI data)
• afni-common (miscellaneous scripts and data files for AFNI)
• afni-dev (header and static libraries for AFNI plugin development)
• ants (advanced normalization tools for brain and image analysis)
• arno-iptables-firewall (single- and multi-homed firewall script with DSL/ADSL support)
• autotools-dev (Update infrastructure for config.{guess,sub} files)
• biosig-tools (format conversion tools for biomedical data formats)
• caret (Computerized Anatomical Reconstruction and Editing Toolkit)
• cde (package everything required to execute a Linux command on another computer)
• cgroup-bin (Tools to control and monitor control groups)
• cmtk (Computational Morphometry Toolkit)
• condor (distributed workload management system)
• condor-dbg (distributed workload management system - debugging symbols)
• condor-dev (distributed workload management system - development files)
• condor-doc (distributed workload management system - documentation)
• connectomeviewer (Interactive Analysis and Visualization for MR Connectomics)
• coop-computing-tools (cooperative computing tools)
• coop-computing-tools-dev (libraries and header files for coop-computing-tools)
• coop-computing-tools-doc (documentation for coop-computing-tools)
• cython (C-Extensions for Python)
• cython-dbg (C-Extensions for Python (Debug Build of Cython))
• debian-handbook (reference book for Debian users and system administrators)
• debootstrap (Bootstrap a basic Debian system)
• debootstrap-udeb ()
• debruijn (De Bruijn cycle generator)
• dicomnifti (converts DICOM files into the NIfTI format)
• dmtcp (Checkpoint/Restart functionality for Linux processes)
• dmtcp-dbg (Debug package for dmtcp)
• eatmydata (library and utilities designed to disable fsync and friends)
• edac-utils (report kernel-detected PCI and ECC RAM errors)
• eegdev-plugins-free (Biosignal acquisition device library (free plugins))
• eeglab11-sampledata (sample EEG data for EEGLAB tutorials)
• eegview (Software to display EEG data in realtime)
• fail2ban (ban hosts that cause multiple authentication errors)
• freeipmi (GNU implementation of the IPMI protocol)
• freeipmi-bmc-watchdog (GNU implementation of the IPMI protocol - BMC watchdog)
• freeipmi-common (GNU implementation of the IPMI protocol - common files)
• freeipmi-ipmidetect (GNU IPMI - IPMI node detection tool)
• freeipmi-tools (GNU implementation of the IPMI protocol - tools)
• freenect (library for accessing Kinect device – metapackage)
• fsl (transitional dummy package)
• fsl-5.0 (transitional dummy package)
• fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
• fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
• fsl-5.0-doc (documentation for FSL)
• fsl-complete (metapackage for the entire FSL suite (tools and data))
• fsl-core (metapackage for the latest version of FSL)
• fsl-doc-5.0 (transitional dummy package)
• fslview (viewer for (f)MRI and DTI data)
• fslview-doc (Documentation for FSLView)
• gdf-tools (IO library for the GDF – helper tools)
• gifti-bin (tools shipped with the GIFTI library)
• glew-utils (OpenGL Extension Wrangler - utilities)
• gmsl (extra functions to extend functionality of GNU Makefiles)
• guacamole (HTML5 web application for accessing remote desktops)
• guacamole-tomcat (Tomcat-based Guacamole install with VNC support)
• guacd (Guacamole proxy daemon)
• incf-nidash-oneclick-clients (utility for pushing DICOM data to the INCF datasharing server)
• ipython01x (enhanced interactive Python shell)
• ipython01x-doc (enhanced interactive Python shell)
• ipython01x-notebook (enhanced interactive Python shell – notebook dummy package)
• ipython01x-parallel (enhanced interactive Python shell)
• ipython01x-qtconsole (enhanced interactive Python shell – notebook dummy package)
• isis-utils (utilities for the ISIS neuroimaging data I/O framework)
• itksnap (semi-automatic segmentation of structures in 3D images)
• jist (Java Image Science Toolkit)
• kbibtex (BibTeX editor for KDE)
• klustakwik (automatic sorting of the samples (spikes) into clusters)
• libbiosig-dev (I/O library for biomedical data - development files)
• libbiosig1 (I/O library for biomedical data - dynamic library)
• libbiosig1-dbg (I/O library for biomedical data - debug symbols)
• libcgroup-dev (Development libraries to develop applications that utilize control groups)
• libcgroup1 (Library to control and monitor control groups)
• libclassad-dev (Condor classads expression language - development library)
• libclassad3 (Condor classads expression language - runtime library)
• libdmtcpaware-dev (DMTCP programming interface – developer package)
• libdmtcpaware1 (DMTCP programming interface)
• libdrawtk-dev (Library to simple and efficient 2D drawings (development files))
• libdrawtk0 (Library to simple and efficient 2D drawings)
• libdrawtk0-dbg (Library to simple and efficient 2D drawings (debugging symbols))
• libedac-dev (report kernel-detected PCI and ECC RAM errors)
• libedac1 (report kernel-detected PCI and ECC RAM errors)
• libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
• libeegdev-dev (Biosignal acquisition device library (Developement files))
• libeegdev0 (Biosignal acquisition device library)
• libeegdev0-dbg (Biosignal acquisition device library (Debugging symbols))
• libeigen3-dev (lightweight C++ template library for linear algebra)
• libeigen3-doc (eigen3 API docmentation)
• libfreeipmi-dev (GNU IPMI - development package)
• libfreeipmi12 (GNU IPMI - libraries)
• libfreenect-bin (library for accessing Kinect device – utilities and samples)
• libfreenect-demos (library for accessing Kinect device – dummy package)
• libfreenect-dev (library for accessing Kinect device – development files)
• libfreenect-doc (library for accessing Kinect device – documentation)
• libfreenect0.1 (library for accessing Kinect device)
• libgdf-dev (IO library for the GDF – development library)
• libgdf0 (IO library for the GDF (general dataformat for biosignals))
• libgdf0-dbg (IO library for the GDF – debug symbols)
• libgiftiio-dev (IO library for the GIFTI cortical surface data format)
• libgiftiio0 (IO library for the GIFTI cortical surface data format)
• libglew1.9 (OpenGL Extension Wrangler - runtime environment)
• libglew1.9-dbg (OpenGL Extension Wrangler (debugging symbols))
• libglew1.9-dev (OpenGL Extension Wrangler - development environment)
• libglewmx1.9 (OpenGL Extension Wrangler (Multiple Rendering Contexts))
• libglewmx1.9-dbg (OpenGL Extension Wrangler MX (debugging symbols))
• libglewmx1.9-dev (OpenGL Extension Wrangler MX - development environment)
• libguac-client-vnc0 (VNC client plugin for Guacamole)
• libguac-dev (Development headers for the core Guacamole library)
• libguac3 (Core Guacamole library used by guacd and client plugins)
• libipmiconsole-dev (GNU IPMI - ipmiconsole development package)
• libipmiconsole2 (GNU IPMI - Serial-over-Lan library)
• libipmidetect-dev (GNU IPMI - ipmidetect development package)
• libipmidetect0 (GNU IPMI - IPMI node detection library)
• libipmimonitoring-dev (GNU IPMI - ipmimonitoring development package)
• libipmimonitoring5 (GNU IPMI - Sensor monitoring library)
• libisis-core-dev (I/O framework for neuroimaging data)
• libisis-core0 (I/O framework for neuroimaging data)
• libisis-ioplugins-common (data format plugins for the ISIS framework)
• libisis-ioplugins-dicom (dicom io plugin for the ISIS framework)
• libisis-qt4-0 (Qt4 bindings for ISIS data I/O framework)
• libisis-qt4-dev (Qt4 bindings for ISIS data I/O framework (development headers))
• libjs-underscore (JavaScript’s functional programming helper library)
• libmcpanel-dev (Library to display multichannel data in realtime (Developement files))
• libmcpanel0 (Library to display multichannel data in realtime)
• libmcpanel0-dbg (Library to display multichannel data in realtime (Debugging symbols))
• libmtcp-dev (Developer package for libmtcp)
• libmtcp1 (DMTCP library needed for checkpointing a standalone process)
• libnifti-dev (IO libraries for the NIfTI-1 data format)
• libnifti-doc (NIfTI library API documentation)
• libnifti2 (IO libraries for the NIfTI-1 data format)
• libodin-dev (static libraries and header for ODIN sequences)
• libopenmeeg-dev (openmeeg library – development files)
• libopenmeeg1 (library for solving EEG and MEG forward and inverse problems)
• libopenwalnut1 (Framework for multi-modal medical and brain data visualization)
• libopenwalnut1-dev (Development files for the OpenWalnut visualization framework)
• libopenwalnut1-doc (Developer documentation for the OpenWalnut visualization framework)
• libpam-cgroup (PAM module to move a user session into a cgroup)
• libpgm-5.1-0 (OpenPGM shared library)
• libpgm-dbg (OpenPGM debugging symbols)
• libpgm-dev (OpenPGM development files)
• librtfilter-dev (realtime digital filtering library (development files))
• librtfilter1 (realtime digital filtering library)
• librtfilter1-dbg (realtime digital filtering library (debugging symbols))
• libslicer3 (software package for visualization and image analysis - runtime)
• libslicer3-dev (software package for visualization and image analysis - development)
• libsvm-dev (The LIBSVM header files)
• libsvm-java (Java API to support vector machine library)
• libsvm-tools (The LIBSVM binary tools)
• libsvm3 (library implementing support vector machines)
• libsvm3-java (Java API to support vector machine library)
• libvia-dev (library for volumetric image analysis)
• libvia-doc (VIA library API documentation)
• libvia2 (library for volumetric image analysis)
• libvrpn-dev (Virtual Reality Peripheral Network (development files))
• libvrpn0 (Virtual Reality Peripheral Network (client library))
• libvrpnserver0 (Virtual Reality Peripheral Network (server library))
• libxdffileio-dev (Library to read/write EEG data file formats (development files))
• libxdffileio0 (Library to read/write EEG data file formats)
• libxdffileio0-dbg (Library to read/write EEG data file formats (debugging symbols))
• libzmq-dbg (ZeroMQ lightweight messaging kernel (debugging symbols))
• libzmq-dev (ZeroMQ lightweight messaging kernel (development libraries and header files))
• libzmq1 (ZeroMQ lightweight messaging kernel (shared library))
• lipsia (analysis suite for MRI and fMRI data)
• lipsia-doc (documentation for LIPSIA)
• matlab-eeglab11 (electrophysiological data analysis)
• matlab-gdf (IO library for the GDF – Matlab interface)
• matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
• matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
• matlab-spm8 (analysis of brain imaging data sequences for Matlab)
• matlab-support (distro integration for local MATLAB installations)
• matlab-support-dev (helpers for packages building MATLAB toolboxes)
• mipav (quantitative analysis and visualization of medical images)
• mitools (view, convert and perform basic maths with medical image datasets)
• mriconvert (medical image file conversion utility)
• mricron (magnetic resonance image conversion, viewing and analysis)
• mricron-data (data files for MRIcron)
• mricron-doc (data files for MRIcron)
• mrtrix (diffusion-weighted MRI white matter tractography)
• mrtrix-doc (documentation for mrtrix)
• mwrap (Octave/MATLAB mex generator)
• neurodebian-desktop (neuroscience research environment)
• neurodebian-dev (NeuroDebian development tools)
• neurodebian-guest-additions (NeuroDebian guest additions (DO NOT INSTALL OUTSIDE VIRTUALBOX))
• neurodebian-keyring (GnuPG archive keys of the NeuroDebian archive)
• neurodebian-popularity-contest (Helper for NeuroDebian popularity contest submissions)
• nifti-bin (tools shipped with the NIfTI library)
• nifti2dicom (convert 3D medical images to DICOM 2D series)
• nifti2dicom-data (data files for nifti2dicom)
• nipy-suite (Neuroimaging in Python)
• nipy-suite-doc (Neuroimaging in Python – documentation)
• nuitka (Python compiler with full language support and CPython compatibility)
• numdiff (Compare similar files with numeric fields.)
• octave-biosig (Octave bindings for BioSig library)
• octave-gdf (IO library for the GDF – Octave interface)
• octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
• octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)
• odin (develop, simulate and run magnetic resonance sequences)
• openelectrophy (data analysis framework for intra- and extra-cellular recordings)
• openmeeg-tools (openmeeg library – command line tools)
• opensesame (graphical experiment builder for the social sciences)
• openwalnut-modules (Loaders, algorithms and visualization modules for OpenWalnut)
• openwalnut-qt4 (Qt based user interface for OpenWalnut)
• packaging-tutorial (introduction to Debian packaging)
• psychopy (environment for creating psychology stimuli in Python)
• psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
• psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
• psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)
• python-biosig (Python bindings for BioSig library)
• python-brian (simulator for spiking neural networks)
• python-brian-doc (simulator for spiking neural networks - documentation)
• python-brian-lib (simulator for spiking neural networks – extensions)
• python-cfflib (Multi-modal connectome and metadata management and integration)
• python-dicom (DICOM medical file reading and writing)
• python-dipy (toolbox for analysis of MR diffusion imaging data)
• python-dipy-doc (toolbox for analysis of MR diffusion imaging data – documentation)
• python-dipy-lib (toolbox for analysis of MR diffusion imaging data – extensions)
• python-freenect (library for accessing Kinect device – Python bindings)
• python-isis (Python bindings for ISIS data I/O framework (development headers))
• python-joblib (tools to provide lightweight pipelining in Python)
• python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
• python-libsvm (Python interface for support vector machine library)
• python-mdp (Modular toolkit for Data Processing)
• python-mlpy (high-performance Python package for predictive modeling)
• python-mlpy-doc (documention and examples for mlpy)
• python-mlpy-lib (low-level implementations and bindings for mlpy)
• python-mpi4py (bindings of the Message Passing Interface (MPI) standard)
• python-mpi4py-dbg (bindings of the MPI standard – debug symbols)
• python-mpi4py-doc (bindings of the MPI standard – documentation)
• python-mvpa (multivariate pattern analysis with Python)
• python-mvpa-doc (documentation and examples for PyMVPA)
• python-mvpa-lib (low-level implementations and bindings for PyMVPA)
• python-mvpa2 (multivariate pattern analysis with Python v. 2)
• python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
• python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
• python-networkx (tool to create, manipulate and study complex networks)
• python-networkx-doc (tool to create, manipulate and study complex networks - documentation)
• python-neuroshare (Python interface and tools for Neuroshare)
• python-nibabel (Python bindings to various neuroimaging data formats)
• python-nibabel-doc (documentation for NiBabel)
• python-nibabel-snapshot (Python bindings to various neuroimaging data formats)
• python-nifti (Python interface to the NIfTI I/O libraries)
• python-nipy (Analysis of structural and functional neuroimaging data)
• python-nipy-doc (documentation and examples for NiPy)
• python-nipy-lib (Analysis of structural and functional neuroimaging data)
• python-nipy-lib-dbg (Analysis of structural and functional neuroimaging data)
• python-nipype (Neuroimaging data analysis pipelines in Python)
• python-nipype-doc (Neuroimaging data analysis pipelines in Python – documentation)
• python-nitime (timeseries analysis for neuroscience data (nitime))
• python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
• python-numexpr (Numexpr package evaluates multiple-operator array expressions)
• python-openmeeg (openmeeg library – Python bindings)
• python-openopt (Python module for numerical optimization)
• python-openpyxl (module to read/write OpenXML xlsx/xlsm files)
• python-pandas (data structures for “relational” or “labeled” data)
• python-pandas-lib (low-level implementations and bindings for pandas)
• python-pp (parallel and distributed programming toolkit for Python)
• python-pyentropy (Python module for estimation information theoretic quantities)
• python-pyepl (module for coding psychology experiments in Python)
• python-pyepl-common (module for coding psychology experiments in Python)
• python-pyglet (cross-platform windowing and multimedia library)
• python-pynn (simulator-independent specification of neuronal network models)
• python-pyoptical (python interface to the CRS ‘OptiCAL’ photometer)
• python-pypsignifit (psychometric analysis of psychophysics data in Python)
• python-pyssdh (data analysis framework for intra- and extra-cellular recordings)
• python-pyxid (interface for Cedrus XID and StimTracker devices)
• python-scikits-learn (transitional compatibility package for scikits.learn -> sklearn migration)
• python-scikits.statsmodels (transitional compatibility package for statsmodels migration)
• python-scipy (scientific tools for Python)
• python-scipy-dbg (scientific tools for Python - debugging symbols)
• python-simplegeneric (Simple generic functions for Python)
• python-sklearn (Python modules for machine learning and data mining)
• python-sklearn-doc (documentation and examples for scikit-learn)
• python-sklearn-lib (low-level implementations and bindings for scikit-learn)
• python-sphinx (tool for producing documentation for Python projects)
• python-spyderlib (python IDE for scientists)
• python-statsmodels (Python module for the estimation of statistical models)
• python-statsmodels-doc (documentation and examples for statsmodels)
• python-statsmodels-lib (low-level implementations and bindings for statsmodels)
• python-stfio (Python module to read common electrophysiology file formats.)
• python-surfer (visualize Freesurfer’s data in Python)
• python-sympy (Computer Algebra System (CAS) in Python)
• python-tornado (scalable, non-blocking web server and tools)
• python-traits4 (Manifest typing and reactive programming for Python)
• python-tz (Python version of the Olson timezone database)
• python-workqueue (cooperative computing tools work queue Python bindings)
• python-zmq (Python bindings for 0MQ library)
• python-zmq-dbg (Python bindings for 0MQ library - debugging files)
• python3-dateutil (powerful extensions to the standard datetime module in Python 3)
• python3-tz (Python3 version of the Olson timezone database)
• qlandkarte (Transitional package for QLandkarteGT)
• qlandkartegt (GPS mapping (GeoTiff and vector) and GPSr management)
• qlandkartegt-garmin (QLandkarteGT plugins to access Garmin devices)
• qnifti2dicom (convert 3D medical images to DICOM 2D series (gui))
• rdfind (find duplicate files utility)
• sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
• slicer (software package for visualization and image analysis - main application)
• slicer-data (software package for visualization and image analysis - share)
• spm8-common (analysis of brain imaging data sequences)
• spm8-data (data files for SPM8)
• spm8-doc (manual for SPM8)
• spyder (python IDE for scientists)
• stabilitycalc (evaluate fMRI scanner stability)
• stimfit (Program for viewing and analyzing electrophysiological data)
• stimfit-dbg (Debug symbols for stimfit)
• svgtune (tool to generate a set of .svg files out of a single .svg file)
• testkraut (test and evaluate heterogeneous data processing pipelines)
• ubuntu-keyring (GnuPG keys of the Ubuntu archive)
• ubuntu-keyring-udeb ()
• via-bin (tools for volumetric image analysis)
• virtual-mri-nonfree (Virtual Magnetic Resonance Imager)
• vowpal-wabbit (fast and scalable online machine learning algorithm)
• voxbo (processing, statistical analysis, and display of brain imaging data)
• vrpn (Virtual Reality Peripheral Network (executables))
• vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
• xmhtml1 (A Motif widget for display HTML 3.2)
• xmhtml1-dev (A Motif widget for display HTML 3.2)
• xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

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