Packages for Debian GNU/Linux 7.0 (wheezy)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
aghermann
  • aghermann (Sleep-research experiment manager)
ants
  • ants (advanced normalization tools for brain and image analysis)
bats
  • bats (bash automated testing system)
biosig4c++
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)
btrfs-tools
caret
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)
cctools
cde
  • cde (package everything required to execute a Linux command on another computer)
cfflib
  • python-cfflib (Multi-modal connectome and metadata management and integration)
citeproc-py
cmtk
  • cmtk (Computational Morphometry Toolkit)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
condor
  • condor (transitional dummy package)
  • condor-dbg (transitional dummy package)
  • condor-dev (transitional dummy package)
  • condor-doc (transitional dummy package)
  • htcondor (distributed workload management system)
  • htcondor-dbg (distributed workload management system - debugging symbols)
  • htcondor-dev (distributed workload management system - development files)
  • htcondor-doc (distributed workload management system - documentation)
  • libclassad-dev (HTCondor classads expression language - development library)
  • libclassad7 (HTCondor classads expression language - runtime library)
connectome-workbench
connectomeviewer
contextlib2
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
debian-handbook
  • debian-handbook (reference book for Debian users and system administrators)
debruijn
dh-python
  • dh-python (Debian helper tools for packaging Python libraries and applications)
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)
  • dmtcp-dbg (Debug package for dmtcp)
docopt
double-conversion
drawtk
  • libdrawtk-dev (Library to simple and efficient 2D drawings (development files))
  • libdrawtk0 (Library to simple and efficient 2D drawings)
  • libdrawtk0-dbg (Library to simple and efficient 2D drawings (debugging symbols))
edac-utils
  • edac-utils (report kernel-detected PCI and ECC RAM errors)
  • libedac-dev (report kernel-detected PCI and ECC RAM errors)
  • libedac1 (report kernel-detected PCI and ECC RAM errors)
  • libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
eegdev
eeglab11
eegview
  • eegview (Software to display EEG data in realtime)
eigen3
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)
fis-gtm
  • fis-gtm (metapackage for the latest version of FIS-GT.M database)
  • fis-gtm-6.0-003 (package for FIS-GT.M database)
freeipmi
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsl-eddy-nonfree
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslview
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-adapter
git-annex-metadata-gui
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)
glew
gmsl
  • gmsl (extra functions to extend functionality of GNU Makefiles)
google-glog
guacamole-client
  • guacamole (HTML5 web application for accessing remote desktops)
  • guacamole-tomcat (Tomcat-based Guacamole install with VNC support)
guacamole-server
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
impressive
  • impressive (PDF presentation tool with eye candies)
incf-nidash-oneclick
init-system-helpers
insighttoolkit4
ipython01x
ipython1x
isis
jdcal
  • python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
  • python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
joblib
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)
lazyarray
  • python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
libcgroup
  • cgroup-bin (Tools to control and monitor control groups)
  • libcgroup-dev (Development libraries to develop applications that utilize control groups)
  • libcgroup1 (Library to control and monitor control groups)
  • libpam-cgroup (PAM module to move a user session into a cgroup)
libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)
  • libgdf-dev (IO library for the GDF – development library)
  • libgdf0 (IO library for the GDF (general dataformat for biosignals))
  • libgdf0-dbg (IO library for the GDF – debug symbols)
  • matlab-gdf (IO library for the GDF – Matlab interface)
  • octave-gdf (IO library for the GDF – Octave interface)
libguac
  • libguac-dev (Development headers for the core Guacamole library)
  • libguac3 (Core Guacamole library used by guacd and client plugins)
libmialm
  • libmialm-dev (Development files for the MIA landmark library)
  • libmialm-doc (Documentation for the MIA landmark library)
  • libmialm3 (Landmark handling for the MIA tool chain)
  • libmialm3-dbg (Debug information for the MIA landmark library)
libusb-1.0
libvistaio
matlab-support
mcpanel
  • libmcpanel-dev (Library to display multichannel data in realtime (Developement files))
  • libmcpanel0 (Library to display multichannel data in realtime)
  • libmcpanel0-dbg (Library to display multichannel data in realtime (Debugging symbols))
mdp
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mia
  • libmia-2.0-8 (library for 2D and 3D gray scale image processing)
  • libmia-2.0-8-dbg (Debug information for the MIA library)
  • libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)
  • libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)
  • mia-tools (Command line tools for gray scale image processing)
  • mia-tools-dbg (Debugging information for the MIA command line tools)
  • mia-tools-doc (Cross-referenced documentation of the MIA command line tools)
mialmpick
  • mialmpick (Tools for landmark picking in 3D volume data sets)
  • mialmpick-dbg (Debug information landmark picking tool mialmpick)
modules
mpi4py
mriconvert
  • mriconvert (medical image file conversion utility)
mricron
mridefacer
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)
  • mrtrix-doc (documentation for mrtrix)
msgpack-python
mwrap
  • mwrap (Octave/MATLAB mex generator)
ncdu
  • ncdu (ncurses disk usage viewer)
neo
  • python-neo (Python IO library for electrophysiological data formats)
netselect
  • netselect (speed tester for choosing a fast network server)
  • netselect-apt (speed tester for choosing a fast Debian mirror)
neurodebian
neurosynth
nibabel
nifti2dicom
nifticlib
nipy
nipy-suite
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
nlopt
  • libnlopt-dev (nonlinear optimization library – development package)
  • libnlopt-guile0 (nonlinear optimization library – Guile bindings)
  • libnlopt0 (nonlinear optimization library)
  • octave-nlopt (nonlinear optimization library – GNU Octave package)
  • python-nlopt (nonlinear optimization library – Python bindings)
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
numpydoc
odin
  • libodin-dev (static libraries and header for ODIN sequences)
  • mitools (view, convert and perform basic maths with medical image datasets)
  • odin (develop, simulate and run magnetic resonance sequences)
openmeeg
openopt
openpyxl
opensesame
  • opensesame (graphical experiment builder for the social sciences)
openstack-pkg-tools
openvibe
openwalnut
ordereddict
orthanc
packaging-tutorial
pandas
parallelpython
  • python-pp (parallel and distributed programming toolkit for Python)
patool
  • patool (command line archive file manager)
patsy
pprocess
props
psignifit3
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pyentropy
  • python-pyentropy (Python module for estimation information theoretic quantities)
pyepl
pygithub
pymc
  • python-pymc (Bayesian statistical models and fitting algorithms)
  • python-pymc-doc (Bayesian statistical models and fitting algorithms)
pymvpa
pymvpa2
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)
pynn
  • python-pynn (simulator-independent specification of neuronal network models)
pysurfer
python-argcomplete
python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
python-expyriment
python-funcsigs
python-future
  • python-future (single-source support for Python 3 and 2 - Python 2.x)
  • python-future-doc (Clean single-source support for Python 3 and 2 - doc)
  • python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-humanize
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-networkx
python-neuroshare
python-psutil
  • python-psutil (module providing convenience functions for managing processes)
  • python3-psutil (module providing convenience functions for managing processes (Python3))
python-py
  • pypy-py (Advanced Python development support library (PyPy))
  • python-py (Advanced Python development support library (Python 2))
  • python3-py (Advanced Python development support library (Python 3))
python-pyo
  • python-pyo (Python module written in C to help digital signal processing script creation)
python-quantities
  • python-quantities (Library for computation of physical quantities with units, based on numpy)
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-tornado
python-traits
  • python-traits4 (Manifest typing and reactive programming for Python)
python-tz
  • python-tz (Python version of the Olson timezone database)
  • python3-tz (Python3 version of the Olson timezone database)
python-w3lib
  • python-w3lib (Collection of web-related functions for Python (Python 2))
  • python3-w3lib (Collection of web-related functions for Python (Python 3))
pyxid
  • python-pyxid (interface for Cedrus XID and StimTracker devices)
pyxnat
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)
rclone
remake
  • remake (GNU make fork with improved error reporting and debugging)
rtfilter
scikit-learn
seaborn
shogun
sigviewer
  • sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
simplegeneric
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
skimage
solar-eclipse
sparql-wrapper-python
sphinx
  • python-sphinx (tool for producing documentation for Python projects)
sphinx-rtd-theme
spm8
spyder
spykeutils
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)
stabilitycalc
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
svgtune
  • svgtune (tool to generate a set of .svg files out of a single .svg file)
testkraut
  • testkraut (test and evaluate heterogeneous data processing pipelines)
tigervnc
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)
  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
ubuntu-keyring
uftp
  • uftp (Encrypted multicast file transfer program)
utopia-documents
via
  • libvia-dev (library for volumetric image analysis)
  • libvia-doc (VIA library API documentation)
  • libvia2 (library for volumetric image analysis)
  • via-bin (tools for volumetric image analysis)
visionegg
vmri-nonfree
vowpal-wabbit
  • libvw-dev (fast and scalable online machine learning algorithm - development files)
  • libvw0 (fast and scalable online machine learning algorithm - dynamic library)
  • vowpal-wabbit (fast and scalable online machine learning algorithm)
  • vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
  • vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
voxbo
  • voxbo (processing, statistical analysis, and display of brain imaging data)
vrpn
  • libvrpn-dev (Virtual Reality Peripheral Network (development files))
  • libvrpn0 (Virtual Reality Peripheral Network (client library))
  • libvrpnserver0 (Virtual Reality Peripheral Network (server library))
  • vrpn (Virtual Reality Peripheral Network (executables))
  • vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
vtk
  • libvtk-java (Visualization Toolkit - A high level 3D visualization library - java)
  • libvtk5-dev (VTK header files for building C++ code)
  • libvtk5-qt4-dev (Visualization Toolkit - A high level 3D visualization library - Qt devel)
  • libvtk5.8 (Visualization Toolkit - A high level 3D visualization library - runtime)
  • libvtk5.8-qt4 (Visualization Toolkit - A high level 3D visualization library - Qt runtime)
  • python-vtk (Python bindings for VTK)
  • tcl-vtk (Tcl bindings for VTK)
  • vtk-doc (VTK class reference documentation)
  • vtk-examples (C++, Tcl and Python example programs/scripts for VTK)
vtk-dicom
xdffileio
xmhtml
  • xmhtml1 (A Motif widget for display HTML 3.2)
  • xmhtml1-dev (A Motif widget for display HTML 3.2)
xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

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