Packages for Ubuntu 16.10 “Yakkety Yak” (yakkety)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
aghermann
  • aghermann (Sleep-research experiment manager)
ants
  • ants (advanced normalization tools for brain and image analysis)
bats
  • bats (bash automated testing system)
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)
btrfs-tools
cde
  • cde (package everything required to execute a Linux command on another computer)
citeproc-py
cmtk
  • cmtk (Computational Morphometry Toolkit)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
condor
  • condor (transitional dummy package)
  • condor-dbg (transitional dummy package)
  • condor-dev (transitional dummy package)
  • condor-doc (transitional dummy package)
  • htcondor (distributed workload management system)
  • htcondor-dbg (distributed workload management system - debugging symbols)
  • htcondor-dev (distributed workload management system - development files)
  • htcondor-doc (distributed workload management system - documentation)
  • libclassad-dev (HTCondor classads expression language - development library)
  • libclassad7 (HTCondor classads expression language - runtime library)
connectome-workbench
contextlib2
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
datalad
  • datalad (data files crawler and data distribution)
  • python-datalad (data files crawler and data distribution (Python 2))
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debian-handbook
  • debian-handbook (reference book for Debian users and system administrators)
debruijn
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)
dockerpty
double-conversion
duecredit
edac-utils
  • edac-utils (report kernel-detected PCI and ECC RAM errors)
  • libedac-dev (report kernel-detected PCI and ECC RAM errors)
  • libedac1 (report kernel-detected PCI and ECC RAM errors)
  • libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
eeglab11
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)
freeipmi
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
gcalcli
  • gcalcli (Google Calendar Command Line Interface)
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)
gmsl
  • gmsl (extra functions to extend functionality of GNU Makefiles)
haskell-network-protocol-xmpp
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
impressive
  • impressive (PDF presentation tool with eye candies)
incf-nidash-oneclick
init-system-helpers
ismrmrd
jasp
  • jasp (Bayesian statistics made accessible)
jdcal
  • python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
  • python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
joblib
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)
lazyarray
  • python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
lda
  • python-lda (Topic modeling with latent Dirichlet allocation for Python 3)
  • python3-lda (Topic modeling with latent Dirichlet allocation)
libcgroup
  • cgroup-bin (Tools to control and monitor control groups)
  • libcgroup-dev (Development libraries to develop applications that utilize control groups)
  • libcgroup1 (Library to control and monitor control groups)
  • libpam-cgroup (PAM module to move a user session into a cgroup)
libgdf
  • gdf-tools (IO library for the GDF – helper tools)
  • libgdf-dev (IO library for the GDF – development library)
  • libgdf0 (IO library for the GDF (general dataformat for biosignals))
  • libgdf0-dbg (IO library for the GDF – debug symbols)
  • matlab-gdf (IO library for the GDF – Matlab interface)
  • octave-gdf (IO library for the GDF – Octave interface)
libmialm
  • libmialm-dev (Development files for the MIA landmark library)
  • libmialm-doc (Documentation for the MIA landmark library)
  • libmialm3 (Landmark handling for the MIA tool chain)
  • libmialm3-dbg (Debug information for the MIA landmark library)
libvistaio
matlab-support
mdp
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mpi4py
mridefacer
msgpack-python
mwrap
  • mwrap (Octave/MATLAB mex generator)
netselect
  • netselect (speed tester for choosing a fast network server)
  • netselect-apt (speed tester for choosing a fast Debian mirror)
neurodebian
nibabel
nifticlib
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
nipy
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
nosexcover
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
openpyxl
openstack-pkg-tools
p7zip
  • p7zip (7zr file archiver with high compression ratio)
  • p7zip-full (7z and 7za file archivers with high compression ratio)
pandas
patsy
pprocess
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pyepl
pygithub
pyglet
  • python-pyglet (cross-platform windowing and multimedia library)
pymvpa2
pysurfer
pytest
pytest-tornado
python-argcomplete
python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
python-click
  • python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)
  • python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)
  • python3-docker (Python 3 wrapper to access docker.io’s control socket)
python-funcsigs
python-future
  • python-future (single-source support for Python 3 and 2 - Python 2.x)
  • python-future-doc (Clean single-source support for Python 3 and 2 - doc)
  • python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-humanize
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)
  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-neuroshare
python-packaging
python-prov
python-psutil
  • python-psutil (module providing convenience functions for managing processes)
  • python3-psutil (module providing convenience functions for managing processes (Python3))
python-py
  • pypy-py (Advanced Python development support library (PyPy))
  • python-py (Advanced Python development support library (Python 2))
  • python3-py (Advanced Python development support library (Python 3))
python-pydotplus
python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
python-quantities
  • python-quantities (Library for computation of physical quantities with units, based on numpy)
python-rpaths
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-tornado
python-tz
  • python-tz (Python version of the Olson timezone database)
  • python3-tz (Python3 version of the Olson timezone database)
python-urllib3
python-w3lib
  • python-w3lib (Collection of web-related functions for Python (Python 2))
  • python3-w3lib (Collection of web-related functions for Python (Python 3))
python-werkzeug
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
rclone
rdflib
  • python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)
  • python-rdflib-doc (Python library containing an RDF triple store [...] (documentation))
  • python-rdflib-tools (Python tools for converting to and from RDF)
  • python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)
remake
  • remake (GNU make fork with improved error reporting and debugging)
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)
  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)
rtfilter
scikit-learn
seaborn
setuptools-scm
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
sparql-wrapper-python
sphinx-rtd-theme
spm8
spyder
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
svgtune
  • svgtune (tool to generate a set of .svg files out of a single .svg file)
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)
  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
ubuntu-keyring
uftp
  • uftp (Encrypted multicast file transfer program)
utopia-documents
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))
  • python3-vcr (record and replay HTML interactions (Python3 library))
visionegg
vmri-nonfree
xdffileio
xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

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