cmtk – Computational Morphometry Toolkit

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).

T. Rohlfing (2009). User Guide to The Computational Morphometry Toolkit. *The Insight Journal, *, . [Abstract]
Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 10.0 (buster) 3.3.1p1+dfsg-1    
Debian GNU/Linux 11.0 (bullseye) 3.3.1p1+dfsg-2    
Debian GNU/Linux 9.0 (stretch) 3.3.1-1.1 3.3.1-1~nd90+1 i386, amd64
Debian testing (bookworm) 3.3.1p2+dfsg-2    
Debian unstable (sid) 3.3.1p2+dfsg-2 3.3.1-1~nd+1 i386, amd64
Ubuntu 16.04 “Xenial Xerus” (xenial) 3.2.2-1.4 3.3.1-1~nd16.04+1 i386, amd64
Ubuntu 18.04 “Bionic Beaver” (bionic) 3.3.1-1.2build1    
Ubuntu 20.04 “Focal Fossa” (focal) 3.3.1p1+dfsg-2build1    
Ubuntu 21.10 “Impish Indri” (impish) 3.3.1p1+dfsg-2build2    
Ubuntu 22.04 “Jammy Jellyfish” (jammy) 3.3.1p2+dfsg-1build1    


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