cmtk – Computational Morphometry Toolkit

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).

Reference:
T. Rohlfing (2009). User Guide to The Computational Morphometry Toolkit. *The Insight Journal, *, . [Abstract]
Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 7.0 (wheezy) 2.2.2-2 3.3.1-1~nd70+1 i386, amd64
Debian GNU/Linux 8.0 (jessie) 3.2.2-1.3 3.3.1-1~nd80+1 i386, amd64
Debian GNU/Linux 9.0 (stretch) 3.3.1-1.1 3.3.1-1~nd90+1 i386, amd64
Debian testing (buster) 3.3.1-1.2    
Debian unstable (sid) 3.3.1-1.2 3.3.1-1~nd+1 i386, amd64
Ubuntu 12.04 LTS “Precise Pangolin” (precise) 2.1.0-1 3.3.1-1~nd12.04+1 i386, amd64
Ubuntu 14.04 “Trusty Tahr” (trusty) 3.0.0-1ubuntu1 3.3.1-1~nd14.04+1 i386, amd64
Ubuntu 16.04 “Xenial Xerus” (xenial) 3.2.2-1.4 3.3.1-1~nd16.04+1 i386, amd64
Ubuntu 16.10 “Yakkety Yak” (yakkety) 3.2.2-1.4build1 3.3.1-1~nd90+1+nd16.10+1 i386, amd64
Ubuntu 17.04 “Zesty Zapus” (zesty) 3.3.1-1.1 3.3.1-1~nd90+1+nd17.04+1 i386, amd64
Ubuntu 17.10 “Artful Aardvark” (artful) 3.3.1-1.2build1    

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