cmtk – Computational Morphometry Toolkit

A software toolkit for computational morphometry of biomedical images, CMTK comprises a set of command line tools and a back-end general-purpose library for processing and I/O.

The command line tools primarily provide the following functionality: registration (affine and nonrigid; single and multi-channel; pairwise and groupwise), image correction (MR bias field estimation; interleaved image artifact correction), processing (filters; combination of segmentations via voting and STAPLE; shape-based averaging), statistics (t-tests; general linear regression).

T. Rohlfing (2009). User Guide to The Computational Morphometry Toolkit. *The Insight Journal, *, . [Abstract]
Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 10.0 (buster) 3.3.1p1+dfsg-1    
Debian GNU/Linux 8.0 (jessie) 3.2.2-1.3 3.3.1-1~nd80+1 i386, amd64
Debian GNU/Linux 9.0 (stretch) 3.3.1-1.1 3.3.1-1~nd90+1 i386, amd64
Debian testing (bullseye) 3.3.1p1+dfsg-2    
Debian unstable (sid) 3.3.1p1+dfsg-2 3.3.1-1~nd+1 i386, amd64
Ubuntu 14.04 “Trusty Tahr” (trusty) 3.0.0-1ubuntu1 3.3.1-1~nd14.04+1 i386, amd64
Ubuntu 16.04 “Xenial Xerus” (xenial) 3.2.2-1.4 3.3.1-1~nd16.04+1 i386, amd64
Ubuntu 18.04 “Bionic Beaver” (bionic) 3.3.1-1.2build1    
Ubuntu 19.04 “Disco Dingo” (disco) 3.3.1p1+dfsg-1    


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