itksnap – semi-automatic segmentation of structures in 3D images

More information
External resources

SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are:

  • Linked cursor for seamless 3D navigation

  • Manual segmentation in three orthogonal planes at once

  • Support for many different 3D image formats, including NIfTI

  • Support for concurrent, linked viewing and segmentation of multiple images

  • Limited support for color images (e.g., diffusion tensor maps)

  • 3D cut-plane tool for fast post-processing of segmentation results

Install this package

Report a bug

Reference:

Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee,, Guido Gerig (2006). User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. *Neuroimage, 31: 1116-1128, *, . [Abstract] [DOI]

Package availability chart

Distribution

Base version

Our version

Architectures

Debian GNU/Linux 10.0 (buster)

3.6.0-3

Debian GNU/Linux 11.0 (bullseye)

3.6.0-5

Debian GNU/Linux 9.0 (stretch)

3.4.0-2

3.2.0-1~nd80+1+nd90+1

i386, amd64

Debian unstable (sid)

2.2.0-1~nd+1

i386

3.2.0-1~nd+1

amd64

Ubuntu 16.04 “Xenial Xerus” (xenial)

3.4.0-1build1

Ubuntu 18.04 “Bionic Beaver” (bionic)

3.6.0-2

Ubuntu 20.04 “Focal Fossa” (focal)

3.6.0-5build1

Comments