python-nipy – Analysis of structural and functional neuroimaging data

NiPy is a Python-based framework for the analysis of structural and functional neuroimaging data. It provides functionality for

  • General linear model (GLM) statistical analysis
  • Combined slice time correction and motion correction
  • General image registration routines with flexible cost functions, optimizers and re-sampling schemes
  • Image segmentation
  • Basic visualization of results in 2D and 3D
  • Basic time series diagnostics
  • Clustering and activation pattern analysis across subjects
  • Reproducibility analysis for group studies
Reference:
K. Jarrod Millman, Matthew Brett (2007). Analysis of functional magnetic resonance imaging in Python. Computing in Science & Engineering, 9, 52–55.
Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 7.0 (wheezy)   0.4.1-1~nd70+1 i386, amd64, sparc, armel
Debian GNU/Linux 8.0 (jessie)   0.4.1-1~nd80+1 i386, amd64, sparc, armel
Debian GNU/Linux 9.0 (stretch)   0.4.1-1~nd90+1 i386, amd64, sparc, armel
Debian testing (buster)   0.4.1-1~nd100+1 i386, amd64, sparc, armel
Debian unstable (sid) 0.4.1-1 0.4.1-1~nd+1 i386, amd64, sparc, armel
Ubuntu 12.04 LTS “Precise Pangolin” (precise) 0.1.999-2build1 0.4.1-1~nd12.04+1 i386, amd64, sparc, armel
Ubuntu 14.04 “Trusty Tahr” (trusty) 0.3.0-1ubuntu2 0.4.1-1~nd14.04+1 i386, amd64, sparc, armel
Ubuntu 16.04 “Xenial Xerus” (xenial) 0.3.0+git262-gbb838d7-1 0.4.1-1~nd16.04+1 i386, amd64, sparc, armel
Ubuntu 16.10 “Yakkety Yak” (yakkety) 0.4.0+git26-gf8d3149-1 0.4.1-1~nd16.10+1 i386, amd64, sparc, armel
Ubuntu 17.04 “Zesty Zapus” (zesty) 0.4.0+git26-gf8d3149-2 0.4.1-1~nd17.04+1 i386, amd64, sparc, armel

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