fsl-oxford-thalamic-connectivity-atlas – probabilistic brain atlas of thalamic white-matter connectivity

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A probabilistic atlas of 7 sub-thalamic regions, segmented according to their white-matter connectivity to cortical areas, kindly provided by Heidi Johansen-Berg and Timothy Behrens, FMRIB.

This connectivity atlas reports probability of anatomical connection from points in the thalamus to each of 7 cortical zones. These probabilities are calculated using probabilistic diffusion tractography in multiple subjects.

This package is part of FSL.

References:

Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage, 31, 968–980. [Abstract] [DOI] [Pubmed]

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Jack L. Lancaster, Marty G. Woldorff, Lawrence M. Parsons, Mario Liotti, Catarina S. Freitas, Lacy Rainey, Peter V. Kochunov, Dan Nickerson, Shawn A. Mikiten, Peter T. Fox (2000). Automated Talairach atlas labels for functional brain mapping. Human Brain Mapping, 10, 120–131. [Abstract] [`DOI <http://dx.doi.org/10.1002/1097-0193(200007)10:3<120::AID-HBM30>3.0.CO;2-8>`_] [Pubmed]

TEJ Behrens, H. Johansen-Berg, MW Woolrich, SM Smith, CAM Wheeler-Kingshott, PA Boulby, GJ Barker, EL Sillery, K. Sheehan, O. Ciccarelli , AJ Thompson, JM Brady, PM Matthews (2003). Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nature Neuroscience, 6, 750–757. [Abstract] [DOI] [Pubmed]

Jörn Diedrichsen, Joshua H Balsters, Jonathan Flavell, Emma Cussans, Narender Ramnani (2009). A probabilistic MR atlas of the human cerebellum. Neuroimage, 46, 39-46. [Abstract] [DOI] [Pubmed]

Package availability chart

Distribution

Base version

Our version

Architectures

Datasets (data)

5.0.7-2

i386, amd64, sparc, armel, ppc64el, mipsel

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