itksnap – semi-automatic segmentation of structures in 3D images¶
- More information
- External resources
SNAP provides semi-automatic segmentation of structures in medical images (e.g. magnetic resonance images of the brain) using active contour methods, as well as manual delineation and image navigation. Noteworthy features are:
- Linked cursor for seamless 3D navigation
- Manual segmentation in three orthogonal planes at once
- Support for many different 3D image formats, including NIfTI
- Support for concurrent, linked viewing and segmentation of multiple images
- Limited support for color images (e.g., diffusion tensor maps)
- 3D cut-plane tool for fast post-processing of segmentation results
- Reference:
- Paul A. Yushkevich, Joseph Piven, Heather Cody Hazlett, Rachel Gimpel Smith, Sean Ho, James C. Gee,, Guido Gerig (2006). User-guided 3D active contour segmentation of anatomical structures: Significantly improved efficiency and reliability. *Neuroimage, 31: 1116-1128, *, . [Abstract] [DOI]
| Distribution | Base version | Our version | Architectures |
|---|---|---|---|
| Debian GNU/Linux 10.0 (buster) | 3.6.0-3 | ||
| Debian GNU/Linux 11.0 (bullseye) | 3.6.0-5 | ||
| Debian GNU/Linux 9.0 (stretch) | 3.4.0-2 | 3.2.0-1~nd80+1+nd90+1 | i386, amd64 |
| Debian unstable (sid) | 3.6.0-5 | 3.2.0-1~nd+1 | amd64 |
| 3.6.0-5 | 2.2.0-1~nd+1 | i386 | |
| Ubuntu 16.04 “Xenial Xerus” (xenial) | 3.4.0-1build1 | ||
| Ubuntu 18.04 “Bionic Beaver” (bionic) | 3.6.0-2 | ||
| Ubuntu 20.04 “Focal Fossa” (focal) | 3.6.0-5build1 | ||
| Ubuntu 21.10 “Impish Indri” (impish) | 3.6.0-5ubuntu1 |