python-nibabel – Python bindings to various neuroimaging data formats

NiBabel provides read and write access to some common medical and neuroimaging file formats, including: ANALYZE (plain, SPM99, SPM2), GIFTI, NIfTI1, MINC, as well as PAR/REC. The various image format classes give full or selective access to header (meta) information and access to the image data is made available via NumPy arrays. NiBabel is the successor of PyNIfTI.

This package also provides a commandline tools:

  • dicomfs - FUSE filesystem on top of a directory with DICOMs
  • nib-ls - ‘ls’ for neuroimaging files
  • parrec2nii - for conversion of PAR/REC to NIfTI images
Package availability chart
Distribution Base version Our version Architectures
Debian GNU/Linux 7.0 (wheezy) 1.2.2-1 2.0.2-1~nd70+1 i386, amd64, sparc, armel
Debian GNU/Linux 8.0 (jessie) 1.3.0-2 2.2.0+git11-g2139ce0d-1~nd80+1 i386, amd64, sparc, armel
Debian GNU/Linux 9.0 (stretch) 2.1.0-1 2.2.0+git11-g2139ce0d-1~nd90+1 i386, amd64, sparc, armel
Debian testing (buster) 2.1.0-1 2.2.0+git11-g2139ce0d-1~nd100+1 i386, amd64, sparc, armel
Debian unstable (sid) 2.1.0-1 2.2.0+git11-g2139ce0d-1~nd+1 i386, amd64, sparc, armel
Ubuntu 12.04 LTS “Precise Pangolin” (precise) 1.1.0-1build1 2.0.2-1~nd12.04+1 i386, amd64, sparc
Ubuntu 14.04 “Trusty Tahr” (trusty) 1.2.2-1 2.2.0+git11-g2139ce0d-1~nd14.04+1 i386, amd64, sparc, armel
Ubuntu 16.04 “Xenial Xerus” (xenial) 2.0.2-2 2.2.0+git11-g2139ce0d-1~nd16.04+1 i386, amd64, sparc, armel
Ubuntu 16.10 “Yakkety Yak” (yakkety) 2.0.2-2 2.2.0+git11-g2139ce0d-1~nd16.10+1 i386, amd64, sparc, armel
Ubuntu 17.04 “Zesty Zapus” (zesty) 2.1.0-1 2.2.0+git11-g2139ce0d-1~nd17.04+1 i386, amd64, sparc, armel
Ubuntu 17.10 “Artful Aardvark” (artful) 2.1.0-1 2.2.0+git11-g2139ce0d-1~nd17.10+1 i386, amd64, sparc, armel

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