fsl-oxford-striatal-atlas – probabilistic atlas of the human brain’s sub-striatal regions

[Note: non-standard licensing terms – please verify license compliance]

This package provide both a structural and a connectivity atlas of the human striatum. For the latter, sub-striatal regions are segmented according to their white-matter connectivity to cortical areas. This connectivity atlas reports anatomical connection from points in the striatum to each of 7 cortical zones obtained using probabilistic diffusion tractography in multiple subjects.

In the structural atlas sub-striatal regions are segmented according to the anatomical structure. Striatum is divided into caudate, putamen and ventral striatum according to the guidelines described by Tziortzi et al., NeuroImage 54: 264-77. The sub-regions were manually delineated on the non-linear MNI152 template.

This package is part of FSL.

References:

Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage, 31, 968–980. [Abstract] [DOI] [Pubmed]

Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles (2005). A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. Neuroimage, 25, 1325–1335. [Abstract] [DOI] [Pubmed]

Kegang Hua, Jiangyang Zhang, Setsu Wakana, Hangyi Jiang, Xin Li, Daniel S Reich, Peter A Calabresi, James J Pekar, Peter C M van Zijl, Susumu Mori (2008). Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage, 39, 336–347. [Abstract] [DOI] [Pubmed]

J Mazziotta, A Toga, A Evans, P Fox, J Lancaster, K Zilles, R Woods, T Paus, G Simpson, B Pike, C Holmes, L Collins, P Thompson, D MacDonald, M Iacoboni, T Schormann, K Amunts, N Palomero-Gallagher, S Geyer, L Parsons, K Narr, N Kabani, G Le Goualher, D Boomsma, T Cannon, R Kawashima, and B Mazoyer (2001). A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). The Royal Society Philosophical Transactions B, 356, 1293–1322. [Abstract] [DOI]

Jack L. Lancaster, Marty G. Woldorff, Lawrence M. Parsons, Mario Liotti, Catarina S. Freitas, Lacy Rainey, Peter V. Kochunov, Dan Nickerson, Shawn A. Mikiten, Peter T. Fox (2000). Automated Talairach atlas labels for functional brain mapping. Human Brain Mapping, 10, 120–131. [Abstract] [`DOI <http://dx.doi.org/10.1002/1097-0193(200007)10:3<120::AID-HBM30>3.0.CO;2-8>`_] [Pubmed]

TEJ Behrens, H. Johansen-Berg, MW Woolrich, SM Smith, CAM Wheeler-Kingshott, PA Boulby, GJ Barker, EL Sillery, K. Sheehan, O. Ciccarelli , AJ Thompson, JM Brady, PM Matthews (2003). Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nature Neuroscience, 6, 750–757. [Abstract] [DOI] [Pubmed]

Jörn Diedrichsen, Joshua H Balsters, Jonathan Flavell, Emma Cussans, Narender Ramnani (2009). A probabilistic MR atlas of the human cerebellum. Neuroimage, 46, 39-46. [Abstract] [DOI] [Pubmed]

Package availability chart

Distribution

Base version

Our version

Architectures

Datasets (data)

5.0.7-2

i386, amd64, sparc, armel, ppc64el, mipsel

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