fsl-resting-connectivity-parcellation-atlases – brain parcellations based on resting state connectivity

[Note: non-standard licensing terms – please verify license compliance]

A collection of parcellations based on resting-state functional connectivity as measured with fMRI. Four parcellations of particular cortical regions are available:

  • Parietal cortex Mars et al. (2011). Diffusion-Weighted Imaging Tractography-Based Parcellation of the Human Parietal Cortex and Comparison with Human and Macaque Resting-State Functional Connectivity. The Journal of Neuroscience, 31, 4087-4100.
  • Temporoparietal junction area (TPJ) Mars et al. (2012). Connectivity-Based Subdivisions of the Human Right “Temporoparietal Junction Area”: Evidence for Different Areas Participating in Different Cortical Networks. Cerebral Cortex, 22, 1894-1903.
  • Dorsal Frontal Cortex Sallet et al. (2013). The Organization of Dorsal Frontal Cortex in Humans and Macaques. The Journal of Neuroscience, 33, 12255-12274.
  • Ventral Frontal Cortex Neubert et al. (2014). Comparison of Human Ventral Frontal Cortex Areas for Cognitive Control and Language with Areas in Monkey Frontal Cortex, Neuron, 81, 700-713.

This package is part of FSL.

References:

Rahul S. Desikan, Florent Ségonne, Bruce Fischl, Brian T. Quinn, Bradford C. Dickerson, Deborah Blacker, Randy L. Buckner, Anders M. Dale, R. Paul Maguire, Bradley T. Hyman, Marilyn S. Albert, Ronald J. Killiany (2006). An automated labeling system for subdividing the human cerebral cortex on MRI scans into gyral based regions of interest. Neuroimage, 31, 968–980. [Abstract] [DOI] [Pubmed]

Simon B Eickhoff, Klaas E Stephan, Hartmut Mohlberg, Christian Grefkes, Gereon R Fink, Katrin Amunts, Karl Zilles (2005). A new SPM toolbox for combining probabilistic cytoarchitectonic maps and functional imaging data. Neuroimage, 25, 1325–1335. [Abstract] [DOI] [Pubmed]

Kegang Hua, Jiangyang Zhang, Setsu Wakana, Hangyi Jiang, Xin Li, Daniel S Reich, Peter A Calabresi, James J Pekar, Peter C M van Zijl, Susumu Mori (2008). Tract probability maps in stereotaxic spaces: analyses of white matter anatomy and tract-specific quantification. Neuroimage, 39, 336–347. [Abstract] [DOI] [Pubmed]

J Mazziotta, A Toga, A Evans, P Fox, J Lancaster, K Zilles, R Woods, T Paus, G Simpson, B Pike, C Holmes, L Collins, P Thompson, D MacDonald, M Iacoboni, T Schormann, K Amunts, N Palomero-Gallagher, S Geyer, L Parsons, K Narr, N Kabani, G Le Goualher, D Boomsma, T Cannon, R Kawashima, and B Mazoyer (2001). A probabilistic atlas and reference system for the human brain: International Consortium for Brain Mapping (ICBM). The Royal Society Philosophical Transactions B, 356, 1293–1322. [Abstract] [DOI]

Jack L. Lancaster, Marty G. Woldorff, Lawrence M. Parsons, Mario Liotti, Catarina S. Freitas, Lacy Rainey, Peter V. Kochunov, Dan Nickerson, Shawn A. Mikiten, Peter T. Fox (2000). Automated Talairach atlas labels for functional brain mapping. Human Brain Mapping, 10, 120–131. [Abstract] [`DOI <http://dx.doi.org/10.1002/1097-0193(200007)10:3<120::AID-HBM30>3.0.CO;2-8>`_] [Pubmed]

TEJ Behrens, H. Johansen-Berg, MW Woolrich, SM Smith, CAM Wheeler-Kingshott, PA Boulby, GJ Barker, EL Sillery, K. Sheehan, O. Ciccarelli , AJ Thompson, JM Brady, PM Matthews (2003). Non-invasive mapping of connections between human thalamus and cortex using diffusion imaging. Nature Neuroscience, 6, 750–757. [Abstract] [DOI] [Pubmed]

Jörn Diedrichsen, Joshua H Balsters, Jonathan Flavell, Emma Cussans, Narender Ramnani (2009). A probabilistic MR atlas of the human cerebellum. Neuroimage, 46, 39-46. [Abstract] [DOI] [Pubmed]

Package availability chart
Distribution Base version Our version Architectures
Datasets (data)   5.0.7-2 i386, amd64, sparc, mipsel, armel

Comments

blog comments powered by Disqus