Packages for Magnetic Reasonance Imaging

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
caret
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)
connectome-workbench
connectomeviewer
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debruijn
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fslview
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
itksnap
  • itksnap (semi-automatic segmentation of structures in 3D images)
mriconvert
  • mriconvert (medical image file conversion utility)
mricron
mridefacer
nibabel
nifticlib
nipy
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
openmeeg
pydicom
pymvpa2
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)
pyxnat
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)
spm8
statsmodels
voxbo
  • voxbo (processing, statistical analysis, and display of brain imaging data)

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