Packages for Magnetic Reasonance Imaging

  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)
  • connectome-workbench (brain visualization, analysis and discovery tool)
  • connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)
  • connectomeviewer (Interactive Analysis and Visualization for MR Connectomics)
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
  • debruijn (De Bruijn cycle generator)
  • dicomnifti (converts DICOM files into the NIfTI format)
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
  • fslview (viewer for (f)MRI and DTI data)
  • fslview-doc (Documentation for FSLView)
  • heudiconv (DICOM converter with support for structure heuristics)
  • itksnap (semi-automatic segmentation of structures in 3D images)
  • libnifti-dev (IO libraries for the NIfTI-1 data format)
  • libnifti-doc (NIfTI library API documentation)
  • libnifti2 (IO libraries for the NIfTI-1 data format)
  • libopenmeeg-dev (openmeeg library – development files)
  • libopenmeeg1 (library for solving EEG and MEG forward and inverse problems)
  • libslicer3 (software package for visualization and image analysis - runtime)
  • libslicer3-dev (software package for visualization and image analysis - development)
  • lipsia (analysis suite for MRI and fMRI data)
  • lipsia-doc (documentation for LIPSIA)
  • matlab-spm8 (analysis of brain imaging data sequences for Matlab)
  • mriconvert (medical image file conversion utility)
  • mricron (magnetic resonance image conversion, viewing and analysis)
  • mricron-data (data files for MRIcron)
  • mricron-doc (data files for MRIcron)
  • mridefacer (de-identification of MRI data)
  • nifti-bin (tools shipped with the NIfTI library)
  • openmeeg-tools (openmeeg library – command line tools)
  • python-dcmstack (DICOM to Nifti conversion)
  • python-dicom (DICOM medical file reading and writing)
  • python-mvpa2 (multivariate pattern analysis with Python v. 2)
  • python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
  • python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
  • python-nibabel (Python bindings to various neuroimaging data formats)
  • python-nibabel-doc (documentation for NiBabel)
  • python-nifti (Python interface to the NIfTI I/O libraries)
  • python-nipy (Analysis of structural and functional neuroimaging data)
  • python-nipy-doc (documentation and examples for NiPy)
  • python-nipy-lib (Analysis of structural and functional neuroimaging data)
  • python-nipy-lib-dbg (Analysis of structural and functional neuroimaging data)
  • python-nipype (Neuroimaging data analysis pipelines in Python)
  • python-nipype-doc (Neuroimaging data analysis pipelines in Python – documentation)
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
  • python-openmeeg (openmeeg library – Python bindings)
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)
  • python-scikits.statsmodels (transitional compatibility package for statsmodels migration)
  • python-statsmodels (Python module for the estimation of statistical models)
  • python-statsmodels-doc (documentation and examples for statsmodels)
  • python-statsmodels-lib (low-level implementations and bindings for statsmodels)
  • python3-nibabel (Python3 bindings to various neuroimaging data formats)
  • slicer (software package for visualization and image analysis - main application)
  • slicer-data (software package for visualization and image analysis - share)
  • spm8-common (analysis of brain imaging data sequences)
  • spm8-data (data files for SPM8)
  • spm8-doc (manual for SPM8)
  • voxbo (processing, statistical analysis, and display of brain imaging data)

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