Packages for Ubuntu 18.04 “Bionic Beaver” (bionic)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
afni-data
asciidoctor
btrbk
  • btrbk (backup tool for btrfs subvolumes)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
copyq
  • copyq (Advanced clipboard manager with editing and scripting features)
  • copyq-doc (Documentation and examples for CopyQ - HTML format)
  • copyq-plugins (Plugins for CopyQ)
dask
datalad
  • datalad (data files management and distribution platform)
  • python-datalad (data files management and distribution platform)
  • python3-datalad (data files management and distribution platform)
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
duecredit
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsleyes
fsleyes-props
fsleyes-widgets
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslpy
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-remote-rclone
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
indexed-gzip
jasp
  • jasp (Bayesian statistics made accessible)
joblib
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mridefacer
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)
  • mrtrix-doc (documentation for mrtrix)
mrtrix3
  • mrtrix3 (diffusion-weighted MRI white matter tractography)
  • mrtrix3-doc (documentation for mrtrix3)
msgpack-python
neurodebian
nibabel
nipype
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
pandas
patool
  • patool (command line archive file manager)
patsy
pprocess
props
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pydot
pymvpa2
pynwb
  • python-pynwb (Python library for working with Neurodata in the NWB format)
  • python3-pynwb (Python library for working with Neurodata in the NWB format)
python-boto
  • python-boto (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
python-exif
  • python-exif (Python library to extract Exif data from TIFF and JPEG files)
  • python3-exif (Python library to extract Exif data from TIFF and JPEG files)
python-httpretty
python-hypothesis
python-pyperclip
python-urllib3
python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
python-xmp-toolkit
rclone
reprozip
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)
  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)
scikit-learn
singularity-container
skimage
sphinx-gallery
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
sympy
vowpal-wabbit
  • libvw-dev (fast and scalable online machine learning algorithm - development files)
  • libvw0 (fast and scalable online machine learning algorithm - dynamic library)
  • vowpal-wabbit (fast and scalable online machine learning algorithm)
  • vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
  • vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
xlwt
  • python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
  • python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
  • python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)

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