Packages for Ubuntu 16.04 “Xenial Xerus” (xenial)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
aghermann
  • aghermann (Sleep-research experiment manager)
ants
  • ants (advanced normalization tools for brain and image analysis)
btrbk
  • btrbk (backup tool for btrfs subvolumes)
cde
  • cde (package everything required to execute a Linux command on another computer)
cmtk
  • cmtk (Computational Morphometry Toolkit)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
condor
  • condor (transitional dummy package)
  • condor-dbg (transitional dummy package)
  • condor-dev (transitional dummy package)
  • condor-doc (transitional dummy package)
  • htcondor (distributed workload management system)
  • htcondor-dbg (distributed workload management system - debugging symbols)
  • htcondor-dev (distributed workload management system - development files)
  • htcondor-doc (distributed workload management system - documentation)
  • libclassad-dev (HTCondor classads expression language - development library)
  • libclassad7 (HTCondor classads expression language - runtime library)
connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
datalad
  • datalad (data files crawler and data distribution)
  • python-datalad (data files crawler and data distribution (Python 2))
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debruijn
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)
dockerpty
drawtk
  • libdrawtk-dev (Library to simple and efficient 2D drawings (development files))
  • libdrawtk0 (Library to simple and efficient 2D drawings)
  • libdrawtk0-dbg (Library to simple and efficient 2D drawings (debugging symbols))
duecredit
eeglab11
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsl-eddy-nonfree
fsleyes
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslpy
fslview
gcalcli
  • gcalcli (Google Calendar Command Line Interface)
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-adapter
git-annex-metadata-gui
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
incf-nidash-oneclick
indexed-gzip
ismrmrd
jasp
  • jasp (Bayesian statistics made accessible)
joblib
lda
  • python-lda (Topic modeling with latent Dirichlet allocation for Python 3)
  • python3-lda (Topic modeling with latent Dirichlet allocation)
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mialmpick
  • mialmpick (Tools for landmark picking in 3D volume data sets)
  • mialmpick-dbg (Debug information landmark picking tool mialmpick)
mpi4py
mridefacer
netselect
  • netselect (speed tester for choosing a fast network server)
  • netselect-apt (speed tester for choosing a fast Debian mirror)
neurodebian
neurosynth
nibabel
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
nipy
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
openpyxl
openstack-pkg-tools
p7zip
  • p7zip (7zr file archiver with high compression ratio)
  • p7zip-full (7z and 7za file archivers with high compression ratio)
pandas
patsy
pprocess
props
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pyepl
pygithub
pyglet
  • python-pyglet (cross-platform windowing and multimedia library)
pymvpa2
pyopengl
pysurfer
pytest
pytest-runner
python-argcomplete
python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
python-click
  • python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)
  • python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)
  • python3-docker (Python 3 wrapper to access docker.io’s control socket)
python-funcsigs
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)
  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-prov
python-py
  • pypy-py (Advanced Python development support library (PyPy))
  • python-py (Advanced Python development support library (Python 2))
  • python3-py (Advanced Python development support library (Python 3))
python-pydotplus
python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-urllib3
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
rclone
remake
  • remake (GNU make fork with improved error reporting and debugging)
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)
  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)
scikit-learn
seaborn
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
solar-eclipse
sparql-wrapper-python
spm8
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)
  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
ubuntu-keyring
uftp
  • uftp (Encrypted multicast file transfer program)
utopia-documents
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))
  • python3-vcr (record and replay HTML interactions (Python3 library))
vmri-nonfree
vrpn
  • libvrpn-dev (Virtual Reality Peripheral Network (development files))
  • libvrpn0 (Virtual Reality Peripheral Network (client library))
  • libvrpnserver0 (Virtual Reality Peripheral Network (server library))
  • vrpn (Virtual Reality Peripheral Network (executables))
  • vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
vtk-dicom

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