Packages made by Michael Hanke <michael.hanke@gmail.com>¶
- afni-data
- afni-atlases (standard space brain atlases for AFNI)
- ants
- ants (advanced normalization tools for brain and image analysis)
- arno-iptables-firewall
- arno-iptables-firewall (single- and multi-homed firewall script with DSL/ADSL support)
- biosig4c++
- biosig-tools (format conversion tools for biomedical data formats)
- libbiosig-dev (I/O library for biomedical data - development files)
- libbiosig1 (I/O library for biomedical data - dynamic library)
- libbiosig1-dbg (I/O library for biomedical data - debug symbols)
- octave-biosig (Octave bindings for BioSig library)
- python-biosig (Python bindings for BioSig library)
- brian
- python-brian (simulator for spiking neural networks)
- python-brian-doc (simulator for spiking neural networks - documentation)
- python-brian-lib (simulator for spiking neural networks – extensions)
- cde
- cde (package everything required to execute a Linux command on another computer)
- cmtk
- cmtk (Computational Morphometry Toolkit)
- connectome-workbench
- connectome-workbench (brain visualization, analysis and discovery tool)
- connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)
- convert3d
- convert3d (tool(s) for converting 3D images between common file formats)
- gifticlib
- gifti-bin (tools shipped with the GIFTI library)
- libgiftiio-dev (IO library for the GIFTI cortical surface data format)
- libgiftiio0 (IO library for the GIFTI cortical surface data format)
- git-annex-remote-rclone
- git-annex-remote-rclone (rclone-based git annex special remote)
- haxby2001
- haxby2001-faceobject (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject1 (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject2 (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject3 (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject4 (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject5 (face and object processing in ventral temporal cortex (fMRI))
- haxby2001-faceobject-subject6 (face and object processing in ventral temporal cortex (fMRI))
- jist
- jist (Java Image Science Toolkit)
- klustakwik
- klustakwik (automatic sorting of the samples (spikes) into clusters)
- libgdf
- gdf-tools (IO library for the GDF – helper tools)
- libgdf-dev (IO library for the GDF – development library)
- libgdf0 (IO library for the GDF (general dataformat for biosignals))
- matlab-gdf (IO library for the GDF – Matlab interface)
- octave-gdf (IO library for the GDF – Octave interface)
- mipav
- mipav (quantitative analysis and visualization of medical images)
- mni-colin27
- mni-colin27-minc (Talairach stereotaxic space template)
- mni-colin27-nifti (Talairach stereotaxic space template)
- mni-icbm152-nlin
- mni-icbm152-nlin-2009a (MNI stereotaxic space human brain template)
- mni-icbm152-nlin-2009b (MNI stereotaxic space human brain template)
- mni-icbm152-nlin-2009c (MNI stereotaxic space human brain template)
- mpi4py
- python-mpi4py (bindings of the Message Passing Interface (MPI) standard)
- python-mpi4py-dbg (bindings of the MPI standard – debug symbols)
- python-mpi4py-doc (bindings of the MPI standard – documentation)
- python3-mpi4py (bindings of the Message Passing Interface (MPI) standard)
- python3-mpi4py-dbg (bindings of the MPI standard – debug symbols)
- neurosynth
- python-neurosynth (large-scale synthesis of functional neuroimaging data)
- nibabel
- python-nibabel-doc (documentation for NiBabel)
- python3-nibabel (Python3 bindings to various neuroimaging data formats)
- nibabel-snapshot
- python-nibabel-snapshot (Python bindings to various neuroimaging data formats)
- nipy
- python-nipy-doc (documentation and examples for NiPy)
- python3-nipy (Analysis of structural and functional neuroimaging data)
- python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
- python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))
- nipy-suite
- nipy-suite (Neuroimaging in Python)
- nipy-suite-doc (Neuroimaging in Python – documentation)
- nipype
- python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
- python3-nipype (Neuroimaging data analysis pipelines in Python3)
- openelectrophy
- openelectrophy (data analysis framework for intra- and extra-cellular recordings)
- python-pyssdh (data analysis framework for intra- and extra-cellular recordings)
- openmeeg
- libopenmeeg-dev (openmeeg library – development files)
- libopenmeeg1 (library for solving EEG and MEG forward and inverse problems)
- openmeeg-tools (openmeeg library – command line tools)
- python-openmeeg (openmeeg library – Python bindings)
- openpyxl
- python-openpyxl (Python module to read/write OpenXML xlsx/xlsm files)
- python3-openpyxl (Python 3 module to read/write OpenXML xlsx/xlsm files)
- openwalnut
- libopenwalnut1 (Framework for multi-modal medical and brain data visualization)
- libopenwalnut1-dev (Development files for the OpenWalnut visualization framework)
- libopenwalnut1-doc (Developer documentation for the OpenWalnut visualization framework)
- openwalnut-modules (Loaders, algorithms and visualization modules for OpenWalnut)
- openwalnut-qt4 (Qt based user interface for OpenWalnut)
- pandas
- python-pandas (data structures for “relational” or “labeled” data)
- python-pandas-doc (documentation and examples for pandas)
- python-pandas-lib (low-level implementations and bindings for pandas)
- python3-pandas (data structures for “relational” or “labeled” data - Python 3)
- python3-pandas-lib (low-level implementations and bindings for pandas - Python 3)
- patsy
- python-patsy (statistical models in Python using symbolic formulas)
- python-patsy-doc (documentation and examples for patsy)
- python3-patsy (statistical models in Python using symbolic formulas)
- psychopy
- psychopy (environment for creating psychology stimuli in Python)
- psychtoolbox-3
- octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
- psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
- psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
- psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)
- psychtoolbox-3-nonfree
- matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
- matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
- octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)
- pyepl
- python-pyepl (module for coding psychology experiments in Python)
- python-pyepl-common (module for coding psychology experiments in Python)
- pyglet
- python3-pyglet (cross-platform windowing and multimedia library (Python 3))
- pymc
- python-pymc (Bayesian statistical models and fitting algorithms)
- python-pymc-doc (Bayesian statistical models and fitting algorithms)
- pymvpa
- python-mvpa (multivariate pattern analysis with Python)
- python-mvpa-doc (documentation and examples for PyMVPA)
- python-mvpa-lib (low-level implementations and bindings for PyMVPA)
- pyoptical
- python-pyoptical (python interface to the CRS ‘OptiCAL’ photometer)
- python-mne
- python-mne (Python modules for MEG and EEG data analysis)
- pyxid
- python3-pyxid (interface for Cedrus XID and StimTracker devices)
- pyxnat
- python-pyxnat (Interface to access neuroimaging data on XNAT servers)
- scikit-learn
- python-sklearn (Python modules for machine learning and data mining)
- python-sklearn-doc (documentation and examples for scikit-learn)
- python-sklearn-lib (low-level implementations and bindings for scikit-learn)
- python3-sklearn (Python modules for machine learning and data mining - Python 3)
- python3-sklearn-lib (low-level implementations and bindings for scikit-learn - Python 3)
- seaborn
- python-seaborn (statistical visualization library)
- python3-seaborn (statistical visualization library)
- sigviewer
- sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
- spykeutils
- python-spykeutils (utilities for analyzing electrophysiological data)
- spykeviewer
- spykeviewer (graphical utility for analyzing electrophysiological data)
- statsmodels
- python-statsmodels (Python module for the estimation of statistical models)
- python-statsmodels-doc (documentation and examples for statsmodels)
- python-statsmodels-lib (low-level implementations and bindings for statsmodels)
- python3-statsmodels (Python3 module for the estimation of statistical models)
- python3-statsmodels-lib (Python3 low-level implementations and bindings for statsmodels)
- xppaut
- xppaut (Phase Plane Plus Auto: Solves many kinds of equations)