Packages made by Yaroslav Halchenko <debian@onerussian.com>

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
afni-data
ants
  • ants (advanced normalization tools for brain and image analysis)
biosig4c++
brian
caret
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)
caret-data
cctools
cde
  • cde (package everything required to execute a Linux command on another computer)
cmtk
  • cmtk (Computational Morphometry Toolkit)
connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
cython
  • cython (C-Extensions for Python)
  • cython-dbg (C-Extensions for Python (Debug Build of Cython))
datalad
  • datalad (data files crawler and data distribution)
  • python-datalad (data files crawler and data distribution (Python 2))
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
debruijn
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)
dipy
  • python-dipy (toolbox for analysis of MR diffusion imaging data)
  • python-dipy-doc (toolbox for analysis of MR diffusion imaging data – documentation)
  • python-dipy-lib (toolbox for analysis of MR diffusion imaging data – extensions)
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)
  • dmtcp-dbg (Debug package for dmtcp)
eeglab11
freeipmi
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsl-feeds
  • fsl-feeds (FSL Evaluation and Example Data Suite)
fsldata
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslview
gifticlib
  • gifti-bin (tools shipped with the GIFTI library)
  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)
  • libgiftiio0 (IO library for the GIFTI cortical surface data format)
haxby2001
itksnap
  • itksnap (semi-automatic segmentation of structures in 3D images)
jist
  • jist (Java Image Science Toolkit)
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)
libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)
  • libgdf-dev (IO library for the GDF – development library)
  • libgdf0 (IO library for the GDF (general dataformat for biosignals))
  • libgdf0-dbg (IO library for the GDF – debug symbols)
  • matlab-gdf (IO library for the GDF – Matlab interface)
  • octave-gdf (IO library for the GDF – Octave interface)
matlab-support
mclaren-rhesus-macaque-atlas
mdp
  • python-mdp (Modular toolkit for Data Processing)
mipav
  • mipav (quantitative analysis and visualization of medical images)
mlpy
mni-colin27
mni-icbm152-nlin
mpi4py
mricron
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)
  • mrtrix-doc (documentation for mrtrix)
neo
  • python-neo (Python IO library for electrophysiological data formats)
neurodebian
neurosynth
neurosynth-data
nibabel
nifticlib
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
nipy
nipy-suite
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
odin
  • libodin-dev (static libraries and header for ODIN sequences)
  • mitools (view, convert and perform basic maths with medical image datasets)
  • odin (develop, simulate and run magnetic resonance sequences)
openelectrophy
  • openelectrophy (data analysis framework for intra- and extra-cellular recordings)
  • python-pyssdh (data analysis framework for intra- and extra-cellular recordings)
openmeeg
openpyxl
openwalnut
pandas
patsy
pprocess
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pyepl
pyglet
  • python-pyglet (cross-platform windowing and multimedia library)
pymc
  • python-pymc (Bayesian statistical models and fitting algorithms)
  • python-pymc-doc (Bayesian statistical models and fitting algorithms)
pymvpa
pymvpa2
pymvpa2-tutorialdata
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)
pynn
  • python-pynn (simulator-independent specification of neuronal network models)
pyoptical
pysurfer
pytables
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-quantities
  • python-quantities (Library for computation of physical quantities with units, based on numpy)
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-tornado
python-traits
  • python-traits4 (Manifest typing and reactive programming for Python)
pyxid
  • python-pyxid (interface for Cedrus XID and StimTracker devices)
pyxnat
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)
qlandkartegt
  • qlandkarte (Transitional package for QLandkarteGT)
  • qlandkartegt (GPS mapping (GeoTiff and vector) and GPSr management)
remake
  • remake (GNU make fork with improved error reporting and debugging)
rorden-mri-tutorial
scikit-learn
seaborn
sigviewer
  • sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
singularity-container
skimage
spm8
spykeutils
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)
sri24-atlas
  • sri24-atlas (MRI-based brain atlas of normal adult human brain anatomy)
stabilitycalc
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
svgtune
  • svgtune (tool to generate a set of .svg files out of a single .svg file)
testkraut
  • testkraut (test and evaluate heterogeneous data processing pipelines)
tigervnc
vmri-nonfree
voxbo
  • voxbo (processing, statistical analysis, and display of brain imaging data)
xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

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