Packages made by Yaroslav Halchenko <debian@onerussian.com>

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)

  • afni-common (miscellaneous scripts and data files for AFNI)

  • afni-dbg (debug symbols for AFNI)

  • afni-dev (header and static libraries for AFNI plugin development)

afni-data
ants
  • ants (advanced normalization tools for brain and image analysis)

biosig4c++
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)

caret
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)

caret-data
cctools
cde
  • cde (package everything required to execute a Linux command on another computer)

cmtk
  • cmtk (Computational Morphometry Toolkit)

connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)

cython
  • cython (C-Extensions for Python)

  • cython-dbg (C-Extensions for Python - debug build)

datalad
  • datalad (data files management and distribution platform)

  • python3-datalad (data files management and distribution platform)

dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack
debruijn
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)

dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)

  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)

  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

diskcache
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)

  • dmtcp-dbg (Debug package for dmtcp)

eeglab11
freeipmi
fsl
  • fsl (transitional dummy package)

  • fsl-5.0 (transitional dummy package)

  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)

  • fsl-core (metapackage for the latest version of FSL)

fsl-feeds
  • fsl-feeds (FSL Evaluation and Example Data Suite)

fsldata
fsleyes-props
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))

  • fsl-complete (metapackage for the entire FSL suite (tools and data))

fslview
gifticlib
  • gifti-bin (tools shipped with the GIFTI library)

  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)

  • libgiftiio0 (IO library for the GIFTI cortical surface data format)

git-annex-remote-rclone
haxby2001
hdmf
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)

indexed-gzip
itksnap
  • itksnap (semi-automatic segmentation of structures in 3D images)

jist
  • jist (Java Image Science Toolkit)

json-tricks
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)

libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)

  • libgdf-dev (IO library for the GDF – development library)

  • libgdf0 (IO library for the GDF (general dataformat for biosignals))

  • matlab-gdf (IO library for the GDF – Matlab interface)

  • octave-gdf (IO library for the GDF – Octave interface)

matlab-support
mclaren-rhesus-macaque-atlas
mdp
mipav
  • mipav (quantitative analysis and visualization of medical images)

mni-colin27
mni-icbm152-nlin
mpi4py
mricron
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)

  • mrtrix-doc (documentation for mrtrix)

mrtrix3
  • mrtrix3 (diffusion-weighted MRI white matter tractography)

  • mrtrix3-doc (documentation for mrtrix3)

neo
  • python3-neo (Python IO library for electrophysiological data formats)

neurodebian
neurosynth
neurosynth-data
nibabel
nifticlib
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))

  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))

nipy
  • python-nipy-doc (documentation and examples for NiPy)

  • python3-nipy (Analysis of structural and functional neuroimaging data)

  • python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))

  • python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipy-suite
nipype
nitime
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)

  • python3-nitime (timeseries analysis for neuroscience data (nitime))

numdiff
  • numdiff (Compare similar files with numeric fields)

numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)

  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)

odin
  • libodin-dev (static libraries and header for ODIN sequences)

  • mitools (view, convert and perform basic maths with medical image datasets)

  • odin (develop, simulate and run magnetic resonance sequences)

openelectrophy
  • openelectrophy (data analysis framework for intra- and extra-cellular recordings)

  • python-pyssdh (data analysis framework for intra- and extra-cellular recordings)

openmeeg
openpyxl
openwalnut
pandas
patsy
pprocess
psychopy
  • psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pyepl
pyglet
  • python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pymc
  • python-pymc (Bayesian statistical models and fitting algorithms)

  • python-pymc-doc (Bayesian statistical models and fitting algorithms)

pymvpa
pymvpa2
pymvpa2-tutorialdata
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)

pynn
  • python-pynn (simulator-independent specification of neuronal network models)

pynwb
  • python3-pynwb (Python library for working with Neurodata in the NWB format)

pyoptical
pysurfer
pytables
python-etelemetry
  • python3-etelemetry (lightweight Python3 client to communicate with the etelemetry server)

python-git
  • python-git-doc (Python library to interact with Git repositories - docs)

  • python3-git (Python library to interact with Git repositories - Python 3.x)

python-mne
  • python-mne (Python modules for MEG and EEG data analysis)

python-quantities
  • python3-quantities (Library for computation of physical quantities with units, based on numpy)

python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)

  • python3-smmap (pure Python implementation of a sliding window memory map manager)

python-tornado
pyxid
  • python3-pyxid (interface for Cedrus XID and StimTracker devices)

pyxnat
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)

remake
  • remake (GNU make fork with improved error reporting and debugging)

reprozip
rnc2rng
rorden-mri-tutorial
scikit-learn
seaborn
sigviewer
  • sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)

singularity-container
skimage
spm8
spykeutils
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)

sri24-atlas
  • sri24-atlas (MRI-based brain atlas of normal adult human brain anatomy)

stabilitycalc
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)

  • stimfit (Program for viewing and analyzing electrophysiological data)

  • stimfit-dbg (Debug symbols for stimfit)

testkraut
  • testkraut (test and evaluate heterogeneous data processing pipelines)

tigervnc
vmri-nonfree
voxbo
  • voxbo (processing, statistical analysis, and display of brain imaging data)

xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

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