Packages for Debian GNU/Linux 9.0 (stretch)
- afni
- afni (toolkit for analyzing and visualizing functional MRI data)
- afni-common (miscellaneous scripts and data files for AFNI)
- afni-dbg (debug symbols for AFNI)
- afni-dev (header and static libraries for AFNI plugin development)
- afni-data
-
- aghermann
- aghermann (Sleep-research experiment manager)
- ants
- ants (advanced normalization tools for brain and image analysis)
- asciidoctor
-
- bats
- bats (bash automated testing system)
- biosig4c++
-
- brian
-
- btrbk
- btrbk (backup tool for btrfs subvolumes)
- btrfs-tools
-
- cctools
-
- cde
- cde (package everything required to execute a Linux command on another computer)
- cfflib
- python-cfflib (Multi-modal connectome and metadata management and integration)
- chardet
-
- citeproc-py
-
- cmtk
- cmtk (Computational Morphometry Toolkit)
- cnrun
- cnrun-tools (NeuroML-capable neuronal network simulator (tools))
- libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
- libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
- lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
- condor
- htcondor (distributed workload management system)
- htcondor-dbg (distributed workload management system - debugging symbols)
- htcondor-dev (distributed workload management system - development files)
- htcondor-doc (distributed workload management system - documentation)
- libclassad-dev (HTCondor classads expression language - development library)
- libclassad8 (HTCondor classads expression language - runtime library)
- connectome-workbench
-
- connectomeviewer
-
- contextlib2
-
- convert3d
- convert3d (tool(s) for converting 3D images between common file formats)
- copyq
- copyq (Advanced clipboard manager with editing and scripting features)
- copyq-doc (Documentation and examples for CopyQ - HTML format)
- copyq-plugins (Plugins for CopyQ)
- datalad
- datalad (data files management and distribution platform)
- python-datalad (data files management and distribution platform)
- python3-datalad (data files management and distribution platform)
- datalad-container
-
- dcm2niix
- dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
- dcmstack
-
- debian-handbook
- debian-handbook (reference book for Debian users and system administrators)
- debruijn
-
- dicomnifti
- dicomnifti (converts DICOM files into the NIfTI format)
- dipy
- python-dipy (Python library for the analysis of diffusion MRI datasets)
- python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
- python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
- dmtcp
- dmtcp (Checkpoint/Restart functionality for Linux processes)
- dmtcp-dbg (Debug package for dmtcp)
- docker-compose
- docker-compose (Punctual, lightweight development environments using Docker)
- dockerpty
-
- double-conversion
-
- duecredit
-
- edac-utils
- edac-utils (report kernel-detected PCI and ECC RAM errors)
- libedac-dev (report kernel-detected PCI and ECC RAM errors)
- libedac1 (report kernel-detected PCI and ECC RAM errors)
- libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
- eeglab11
-
- fail2ban
- fail2ban (ban hosts that cause multiple authentication errors)
- freeipmi
-
- fsl
- fsl (transitional dummy package)
- fsl-5.0 (transitional dummy package)
- fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
- fsl-core (metapackage for the latest version of FSL)
- fsl-eddy-nonfree
-
- fsleyes
-
- fsleyes-props
-
- fsleyes-widgets
-
- fslmeta
- fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
- fsl-complete (metapackage for the entire FSL suite (tools and data))
- fslpy
-
- fslview
-
- gcalcli
- gcalcli (Google Calendar Command Line Interface)
- gifticlib
- gifti-bin (tools shipped with the GIFTI library)
- libgiftiio-dev (IO library for the GIFTI cortical surface data format)
- libgiftiio0 (IO library for the GIFTI cortical surface data format)
- git
- git (fast, scalable, distributed revision control system)
- git-all (fast, scalable, distributed revision control system (all subpackages))
- git-core (fast, scalable, distributed revision control system (obsolete))
- git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
- git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
- git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
- git-doc (fast, scalable, distributed revision control system (documentation))
- git-el (fast, scalable, distributed revision control system (emacs support))
- git-email (fast, scalable, distributed revision control system (email add-on))
- git-gui (fast, scalable, distributed revision control system (GUI))
- git-man (fast, scalable, distributed revision control system (manual pages))
- git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
- git-svn (fast, scalable, distributed revision control system (svn interoperability))
- gitk (fast, scalable, distributed revision control system (revision tree visualizer))
- gitweb (fast, scalable, distributed revision control system (web interface))
- git-annex
- git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
- git-annex-adapter
-
- git-annex-metadata-gui
-
- git-annex-remote-rclone
-
- git-hub
- git-hub (Git command line interface to GitHub)
- glew
-
- gmsl
- gmsl (extra functions to extend functionality of GNU Makefiles)
- guacamole-client
- guacamole (HTML5 web application for accessing remote desktops)
- guacamole-tomcat (Tomcat-based Guacamole install with VNC support)
- guacamole-server
-
- h5py
-
- haskell-network-protocol-xmpp
-
- haskell-optparse-applicative
-
- heudiconv
- heudiconv (DICOM converter with support for structure heuristics)
- impressive
- impressive (PDF presentation tool with eye candies)
- incf-nidash-oneclick
-
- indexed-gzip
-
- init-system-helpers
-
- insighttoolkit4
-
- ismrmrd
-
- itksnap
- itksnap (semi-automatic segmentation of structures in 3D images)
- jasp
- jasp (Bayesian statistics made accessible)
- jdcal
- python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
- python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
- joblib
-
- json-tricks
-
- klustakwik
- klustakwik (automatic sorting of the samples (spikes) into clusters)
- lazyarray
- python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
- lda
- python-lda (Topic modeling with latent Dirichlet allocation for Python 3)
- python3-lda (Topic modeling with latent Dirichlet allocation)
- libcgroup
- cgroup-bin (Tools to control and monitor control groups)
- libcgroup-dev (Development libraries to develop applications that utilize control groups)
- libcgroup1 (Library to control and monitor control groups)
- libpam-cgroup (PAM module to move a user session into a cgroup)
- libfreenect
-
- libgdf
- gdf-tools (IO library for the GDF – helper tools)
- libgdf-dev (IO library for the GDF – development library)
- libgdf0 (IO library for the GDF (general dataformat for biosignals))
- libgdf0-dbg (IO library for the GDF – debug symbols)
- matlab-gdf (IO library for the GDF – Matlab interface)
- octave-gdf (IO library for the GDF – Octave interface)
- libguac
- libguac-dev (Development headers for the core Guacamole library)
- libguac3 (Core Guacamole library used by guacd and client plugins)
- libmialm
- libmialm-dev (Development files for the MIA landmark library)
- libmialm-doc (Documentation for the MIA landmark library)
- libmialm3 (Landmark handling for the MIA tool chain)
- libmialm3-dbg (Debug information for the MIA landmark library)
- libvistaio
-
- matlab-support
-
- mdp
-
- melview
-
- mia
- libmia-2.0-8 (library for 2D and 3D gray scale image processing)
- libmia-2.0-8-dbg (Debug information for the MIA library)
- libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)
- libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)
- mia-tools (Command line tools for gray scale image processing)
- mia-tools-dbg (Debugging information for the MIA command line tools)
- mia-tools-doc (Cross-referenced documentation of the MIA command line tools)
- mialmpick
- mialmpick (Tools for landmark picking in 3D volume data sets)
- mialmpick-dbg (Debug information landmark picking tool mialmpick)
- mpi4py
-
- mriconvert
- mriconvert (medical image file conversion utility)
- mricron
-
- mridefacer
-
- mrtrix
- mrtrix (diffusion-weighted MRI white matter tractography)
- mrtrix-doc (documentation for mrtrix)
- mrtrix3
- mrtrix3 (diffusion-weighted MRI white matter tractography)
- mrtrix3-doc (documentation for mrtrix3)
- msgpack-python
-
- mutagen
-
- mwrap
- mwrap (Octave/MATLAB mex generator)
- neo
- python-neo (Python IO library for electrophysiological data formats)
- netselect
- netselect (speed tester for choosing a fast network server)
- netselect-apt (speed tester for choosing a fast Debian mirror)
- neurodebian
-
- nibabel
-
- nifti2dicom
-
- nifticlib
-
- nilearn
- python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
- python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
- nipy
-
- nipype
-
- nitime
- python-nitime (timeseries analysis for neuroscience data (nitime))
- python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
- nlopt
- libnlopt-dev (nonlinear optimization library – development package)
- libnlopt-guile0 (nonlinear optimization library – Guile bindings)
- libnlopt0 (nonlinear optimization library)
- octave-nlopt (nonlinear optimization library – GNU Octave package)
- python-nlopt (nonlinear optimization library – Python bindings)
- nosexcover
-
- nuitka
- nuitka (Python compiler with full language support and CPython compatibility)
- numdiff
- numdiff (Compare similar files with numeric fields)
- numexpr
- python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
- python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
- obs-studio
- libobs-dev (recorder and streamer for live video content (development files))
- libobs0 (recorder and streamer for live video content (shared library))
- obs-plugins (recorder and streamer for live video content (plugins))
- obs-studio (recorder and streamer for live video content)
- odin
- libodin-dev (static libraries and header for ODIN sequences)
- mitools (view, convert and perform basic maths with medical image datasets)
- odin (develop, simulate and run magnetic resonance sequences)
- openopt
-
- openpyxl
-
- openstack-pkg-tools
-
- openwalnut
-
- p7zip
- p7zip (7zr file archiver with high compression ratio)
- p7zip-full (7z and 7za file archivers with high compression ratio)
- pandas
-
- parallelpython
- python-pp (parallel and distributed programming toolkit for Python)
- patool
- patool (command line archive file manager)
- patsy
-
- pprocess
-
- props
-
- psignifit3
-
- psychopy
- psychopy (environment for creating psychology stimuli in Python)
- psychtoolbox-3
-
- psychtoolbox-3-nonfree
-
- pycharm-community-sloppy
-
- pydicom
-
- pydot
-
- pyentropy
- python-pyentropy (Python module for estimation information theoretic quantities)
- pyepl
-
- pygithub
-
- pyglet
-
- pymc
- python-pymc (Bayesian statistical models and fitting algorithms)
- python-pymc-doc (Bayesian statistical models and fitting algorithms)
- pymvpa
-
- pymvpa2
-
- pynifti
-
- pynn
- python-pynn (simulator-independent specification of neuronal network models)
- pynwb
- python-pynwb (Python library for working with Neurodata in the NWB format)
- python3-pynwb (Python library for working with Neurodata in the NWB format)
- pysurfer
-
- pytables
-
- pytest
-
- pytest-localserver
-
- pytest-tornado
-
- python-argcomplete
-
- python-boto
- python-boto (Python interface to Amazon’s Web Services - Python 2.x)
- python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
- python-boto3
- python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
- python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
- python-bz2file
- python-bz2file (Python library for reading and writing bzip2-compressed files)
- python3-bz2file (Python3 library for reading and writing bzip2-compressed files)
- python-click
- python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)
- python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)
- python-deprecation
-
- python-docker
- python-docker (Python wrapper to access docker.io’s control socket)
- python3-docker (Python 3 wrapper to access docker.io’s control socket)
- python-exif
- python-exif (Python library to extract Exif data from TIFF and JPEG files)
- python3-exif (Python library to extract Exif data from TIFF and JPEG files)
- python-expyriment
-
- python-fasteners
-
- python-funcsigs
-
- python-future
-
- python-git
- python-git (Python library to interact with Git repositories - Python 2.7)
- python-git-doc (Python library to interact with Git repositories - docs)
- python3-git (Python library to interact with Git repositories - Python 3.x)
- python-gitdb
-
- python-httpretty
-
- python-humanize
-
- python-hypothesis
-
- python-jsmin
- python-jsmin (JavaScript minifier written in Python - Python 2.x)
- python3-jsmin (JavaScript minifier written in Python - Python 3.x)
- python-mne
- python-mne (Python modules for MEG and EEG data analysis)
- python-monotonic
-
- python-neuroshare
-
- python-packaging
-
- python-prov
-
- python-psutil
- python-psutil (module providing convenience functions for managing processes)
- python3-psutil (module providing convenience functions for managing processes (Python3))
- python-py
- pypy-py (Advanced Python development support library (PyPy))
- python-py (Advanced Python development support library (Python 2))
- python3-py (Advanced Python development support library (Python 3))
- python-pydotplus
-
- python-pygraphviz
- python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
- python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
- python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
- python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
- python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
- python-pyperclip
-
- python-quantities
- python-quantities (Library for computation of physical quantities with units, based on numpy)
- python-rpaths
-
- python-scrapy
-
- python-setuptools
-
- python-smmap
- python-smmap (pure Python implementation of a sliding window memory map manager)
- python3-smmap (pure Python implementation of a sliding window memory map manager)
- python-tornado
-
- python-traits
-
- python-tz
- python-tz (Python version of the Olson timezone database)
- python-urllib3
-
- python-w3lib
- python-w3lib (Collection of web-related functions for Python (Python 2))
- python3-w3lib (Collection of web-related functions for Python (Python 3))
- python-werkzeug
-
- python-whoosh
- python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
- python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
- python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
- python-wrapt
- python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
- python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
- python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
- python-xmp-toolkit
-
- pyxid
- python-pyxid (interface for Cedrus XID and StimTracker devices)
- rclone
-
- rdflib
- python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)
- python-rdflib-doc (Python library containing an RDF triple store [...] (documentation))
- python-rdflib-tools (Python tools for converting to and from RDF)
- python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)
- remake
- remake (GNU make fork with improved error reporting and debugging)
- reprozip
-
- requests
- python-requests (elegant and simple HTTP library for Python2, built for human beings)
- python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
- python3-requests (elegant and simple HTTP library for Python3, built for human beings)
- rtfilter
-
- scikit-learn
-
- seaborn
-
- setuptools-scm
-
- sigviewer
- sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
- simplegeneric
-
- singularity-container
-
- six
- pypy-six (Python 2 and 3 compatibility library (PyPy interface))
- python-six (Python 2 and 3 compatibility library (Python 2 interface))
- python3-six (Python 2 and 3 compatibility library (Python 3 interface))
- sparql-wrapper-python
-
- sphinx
- python-sphinx (tool for producing documentation for Python projects)
- sphinx-gallery
-
- sphinx-rtd-theme
-
- spm8
-
- spyder
-
- spykeutils
-
- spykeviewer
- spykeviewer (graphical utility for analyzing electrophysiological data)
- stabilitycalc
-
- statsmodels
-
- stimfit
- python-stfio (Python module to read common electrophysiology file formats.)
- stimfit (Program for viewing and analyzing electrophysiological data)
- stimfit-dbg (Debug symbols for stimfit)
- svgtune
- svgtune (tool to generate a set of .svg files out of a single .svg file)
- sympy
-
- tigervnc
-
- tqdm
- python-tqdm (fast, extensible progress bar for Python 2)
- python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
- ubuntu-keyring
-
- utopia-documents
-
- vcr.py
- python-vcr (record and replay HTML interactions (Python library))
- python3-vcr (record and replay HTML interactions (Python3 library))
- visionegg
-
- vmri-nonfree
-
- vowpal-wabbit
- libvw-dev (fast and scalable online machine learning algorithm - development files)
- libvw0 (fast and scalable online machine learning algorithm - dynamic library)
- vowpal-wabbit (fast and scalable online machine learning algorithm)
- vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
- vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
- vrpn
- libvrpn-dev (Virtual Reality Peripheral Network (development files))
- libvrpn0 (Virtual Reality Peripheral Network (client library))
- libvrpnserver0 (Virtual Reality Peripheral Network (server library))
- vrpn (Virtual Reality Peripheral Network (executables))
- vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
- vtk-dicom
-
- xdffileio
-
- xlwt
- python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
- python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
- python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)
- xppaut
- xppaut (Phase Plane Plus Auto: Solves many kinds of equations)
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