Packages for Debian GNU/Linux 9.0 (stretch)¶
- afni
- afni (toolkit for analyzing and visualizing functional MRI data)
- afni-common (miscellaneous scripts and data files for AFNI)
- afni-dbg (debug symbols for AFNI)
- afni-dev (header and static libraries for AFNI plugin development)
- afni-data
- afni-atlases (standard space brain atlases for AFNI)
- aghermann
- aghermann (Sleep-research experiment manager)
- ants
- ants (advanced normalization tools for brain and image analysis)
- asciidoctor
- asciidoctor (AsciiDoc to HTML rendering for Ruby)
- asciidoctor-doc (AsciiDoc to HTML rendering for Ruby (documentation))
- ruby-asciidoctor (AsciiDoc to HTML rendering for Ruby (core libraries))
- bats
- bats (bash automated testing system)
- biosig4c++
- biosig-tools (format conversion tools for biomedical data formats)
- libbiosig-dev (I/O library for biomedical data - development files)
- libbiosig1 (I/O library for biomedical data - dynamic library)
- libbiosig1-dbg (I/O library for biomedical data - debug symbols)
- octave-biosig (Octave bindings for BioSig library)
- python-biosig (Python bindings for BioSig library)
- brian
- python-brian (simulator for spiking neural networks)
- python-brian-doc (simulator for spiking neural networks - documentation)
- python-brian-lib (simulator for spiking neural networks – extensions)
- btrbk
- btrbk (backup tool for btrfs subvolumes)
- btrfs-tools
- btrfs-tools (Checksumming Copy on Write Filesystem utilities)
- btrfs-tools-dbg (Checksumming Copy on Write Filesystem utilities (debug))
- btrfs-tools-udeb ()
- cctools
- coop-computing-tools (cooperative computing tools)
- coop-computing-tools-dev (libraries and header files for coop-computing-tools)
- coop-computing-tools-doc (documentation for coop-computing-tools)
- python-workqueue (cooperative computing tools work queue Python bindings)
- cde
- cde (package everything required to execute a Linux command on another computer)
- cfflib
- python-cfflib (Multi-modal connectome and metadata management and integration)
- chardet
- python-chardet (universal character encoding detector for Python2)
- python3-chardet (universal character encoding detector for Python3)
- citeproc-py
- python-citeproc (Citation Style Language (CSL) processor for Python)
- python3-citeproc (Citation Style Language (CSL) processor for Python3)
- cmtk
- cmtk (Computational Morphometry Toolkit)
- cnrun
- cnrun-tools (NeuroML-capable neuronal network simulator (tools))
- libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
- libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
- lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
- condor
- htcondor (distributed workload management system)
- htcondor-dbg (distributed workload management system - debugging symbols)
- htcondor-dev (distributed workload management system - development files)
- htcondor-doc (distributed workload management system - documentation)
- libclassad-dev (HTCondor classads expression language - development library)
- libclassad8 (HTCondor classads expression language - runtime library)
- connectome-workbench
- connectome-workbench (brain visualization, analysis and discovery tool)
- connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)
- connectomeviewer
- connectomeviewer (Interactive Analysis and Visualization for MR Connectomics)
- contextlib2
- python-contextlib2 (Backport and enhancements for the contextlib module - Python 2.7)
- python3-contextlib2 (Backport and enhancements for the contextlib module - Python 3.x)
- convert3d
- convert3d (tool(s) for converting 3D images between common file formats)
- copyq
- copyq (Advanced clipboard manager with editing and scripting features)
- copyq-doc (Documentation and examples for CopyQ - HTML format)
- copyq-plugins (Plugins for CopyQ)
- datalad
- datalad (data files management and distribution platform)
- python3-datalad (data files management and distribution platform)
- datalad-container
- datalad-container (DataLad extension for working with containerized environments)
- dcm2niix
- dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
- dcmstack
- python3-dcmstack (DICOM to NIfTI conversion - python3 package)
- debhelper
- debhelper (helper programs for debian/rules)
- dh-systemd (debhelper add-on to handle systemd unit files - transitional package)
- debian-handbook
- debian-handbook (reference book for Debian users and system administrators)
- debruijn
- debruijn (De Bruijn cycle generator)
- dh-autoreconf
- dh-autoreconf (debhelper add-on to call autoreconf and clean up after the build)
- dh-octave
- dh-octave (Debhelper-based infrastructure for building Octave add-on packages)
- dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)
- dicomnifti
- dicomnifti (converts DICOM files into the NIfTI format)
- dipy
- python-dipy (Python library for the analysis of diffusion MRI datasets)
- python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
- python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
- diskcache
- python3-diskcache (Python module for Disk and file backed persistent cache)
- dmtcp
- docker-compose
- docker-compose (Punctual, lightweight development environments using Docker)
- dockerpty
- python-dockerpty (Pseudo-tty handler for docker Python client (Python 2.x))
- python3-dockerpty (Pseudo-tty handler for docker Python client (Python 3.x))
- double-conversion
- libdouble-conversion-dbg (routines to convert IEEE floats to and from strings (debugging symbols))
- libdouble-conversion-dev (routines to convert IEEE floats to and from strings (development files))
- libdouble-conversion1 (routines to convert IEEE floats to and from strings)
- duecredit
- python-duecredit (Publications (and donations) tracer - Python 2.X)
- python3-duecredit (Publications (and donations) tracer)
- edac-utils
- edac-utils (report kernel-detected PCI and ECC RAM errors)
- libedac-dev (report kernel-detected PCI and ECC RAM errors)
- libedac1 (report kernel-detected PCI and ECC RAM errors)
- libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
- eeglab11
- eeglab11-sampledata (sample EEG data for EEGLAB tutorials)
- matlab-eeglab11 (electrophysiological data analysis)
- exempi
- exempi (command line tool to manipulate XMP metadata)
- libexempi-dev (library to parse XMP metadata (Development files))
- libexempi3 (library to parse XMP metadata (Library))
- fail2ban
- fail2ban (ban hosts that cause multiple authentication errors)
- freeipmi
- freeipmi (GNU implementation of the IPMI protocol)
- freeipmi-bmc-watchdog (GNU implementation of the IPMI protocol - BMC watchdog)
- freeipmi-common (GNU implementation of the IPMI protocol - common files)
- freeipmi-ipmidetect (GNU IPMI - IPMI node detection tool)
- freeipmi-ipmiseld (GNU IPMI - IPMI node detection tool)
- freeipmi-tools (GNU implementation of the IPMI protocol - tools)
- libfreeipmi-dev (GNU IPMI - development package)
- libfreeipmi16 (GNU IPMI - libraries)
- libipmiconsole-dev (GNU IPMI - ipmiconsole development package)
- libipmiconsole2 (GNU IPMI - Serial-over-Lan library)
- libipmidetect-dev (GNU IPMI - ipmidetect development package)
- libipmidetect0 (GNU IPMI - IPMI node detection library)
- libipmimonitoring-dev (GNU IPMI - ipmimonitoring development package)
- libipmimonitoring5a (GNU IPMI - Sensor monitoring library)
- fsl
- fsl (transitional dummy package)
- fsl-5.0 (transitional dummy package)
- fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
- fsl-core (metapackage for the latest version of FSL)
- fsl-eddy-nonfree
- fsl-5.0-eddy-nonfree (correcting eddy currents and movements in diffusion data)
- fsleyes
- fsleyes (FSL image viewer)
- fsleyes-props
- python-fsleyes-props (Python descriptor framework)
- fsleyes-widgets
- python-fsleyes-widgets (Python descriptor framework)
- fslmeta
- fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
- fsl-complete (metapackage for the entire FSL suite (tools and data))
- fslpy
- python-fsl (FSL Python library)
- python3-fsl (FSL Python library)
- fslview
- fslview (viewer for (f)MRI and DTI data)
- fslview-doc (Documentation for FSLView)
- gcalcli
- gcalcli (Google Calendar Command Line Interface)
- gifticlib
- gifti-bin (tools shipped with the GIFTI library)
- libgiftiio-dev (IO library for the GIFTI cortical surface data format)
- libgiftiio0 (IO library for the GIFTI cortical surface data format)
- git
- git (fast, scalable, distributed revision control system)
- git-all (fast, scalable, distributed revision control system (all subpackages))
- git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
- git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
- git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
- git-doc (fast, scalable, distributed revision control system (documentation))
- git-el (fast, scalable, distributed revision control system (emacs support))
- git-email (fast, scalable, distributed revision control system (email add-on))
- git-gui (fast, scalable, distributed revision control system (GUI))
- git-man (fast, scalable, distributed revision control system (manual pages))
- git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
- git-svn (fast, scalable, distributed revision control system (svn interoperability))
- gitk (fast, scalable, distributed revision control system (revision tree visualizer))
- gitweb (fast, scalable, distributed revision control system (web interface))
- git-annex
- git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
- git-annex-adapter
- python3-git-annex-adapter (call git-annex commands from within Python)
- git-annex-metadata-gui
- git-annex-metadata-gui (graphical interface to the metadata functionality of git-annex)
- git-annex-remote-rclone
- git-annex-remote-rclone (rclone-based git annex special remote)
- git-hub
- git-hub (Git command line interface to GitHub)
- glew
- glew-utils (OpenGL Extension Wrangler - utilities)
- libglew1.9 (OpenGL Extension Wrangler - runtime environment)
- libglew1.9-dbg (OpenGL Extension Wrangler (debugging symbols))
- libglew1.9-dev (OpenGL Extension Wrangler - development environment)
- libglewmx1.9 (OpenGL Extension Wrangler (Multiple Rendering Contexts))
- libglewmx1.9-dbg (OpenGL Extension Wrangler MX (debugging symbols))
- libglewmx1.9-dev (OpenGL Extension Wrangler MX - development environment)
- glm
- libglm-dev (C++ library for OpenGL GLSL type-based mathematics)
- libglm-doc (documentation for the OpenGL Mathematics (GLM) library)
- gmsl
- gmsl (extra functions to extend functionality of GNU Makefiles)
- guacamole-client
- guacamole (HTML5 web application for accessing remote desktops)
- guacamole-tomcat (Tomcat-based Guacamole install with VNC support)
- guacamole-server
- guacd (Guacamole proxy daemon)
- libguac-client-rdp0 (RDP support plugin for Guacamole)
- libguac-client-ssh0 (SSH support plugin for Guacamole)
- libguac-client-vnc0 (VNC support plugin for Guacamole)
- libguac-dev (Development headers for the core Guacamole library)
- libguac5 (Core Guacamole library used by guacd and client plugins)
- h5py
- python-h5py (general-purpose Python interface to hdf5 (Python 2))
- python-h5py-dbg (debug extensions for h5py (Python 2))
- python-h5py-doc (documentation for h5py)
- python3-h5py (general-purpose Python interface to hdf5 (Python 3))
- python3-h5py-dbg (debug extensions for h5py (Python 3))
- haskell-network-protocol-xmpp
- libghc-network-protocol-xmpp-dev (Haskell XMPP (Jabber) library)
- libghc-network-protocol-xmpp-doc (Haskell XMPP (Jabber) library; documentation; documentation)
- libghc-network-protocol-xmpp-prof (Haskell XMPP (Jabber) library; profiling libraries; profiling libraries)
- haskell-optparse-applicative
- libghc-optparse-applicative-dev (utilities and combinators for parsing command-line options)
- libghc-optparse-applicative-doc (utilities and combinators for parsing command-line options; documentation)
- libghc-optparse-applicative-prof (utilities and combinators for parsing command-line options; profiling libraries)
- hdmf
- python3-hdmf (Hierarchical Data Modeling Framework)
- heudiconv
- heudiconv (DICOM converter with support for structure heuristics)
- impressive
- impressive (PDF presentation tool with eye candies)
- incf-nidash-oneclick
- incf-nidash-oneclick-clients (utility for pushing DICOM data to the INCF datasharing server)
- indexed-gzip
- python-indexed-gzip (fast random access of gzip files in Python)
- python3-indexed-gzip (fast random access of gzip files in Python)
- init-system-helpers
- dh-systemd (debhelper add-on to handle systemd unit files - transitional package)
- init-system-helpers (helper tools for all init systems)
- insighttoolkit4
- insighttoolkit4-examples (Image processing toolkit for registration and segmentation - examples)
- insighttoolkit4-python (Image processing toolkit for registration and segmentation - Python bindings)
- libinsighttoolkit4-dbg (Debugging information for the Insight Toolkit)
- libinsighttoolkit4-dev (Image processing toolkit for registration and segmentation - development)
- libinsighttoolkit4.7 (Image processing toolkit for registration and segmentation - runtime)
- ismrmrd
- ismrmrd-schema (ISMRM Raw Data format (ISMRMRD) - XML schema)
- ismrmrd-tools (ISMRM Raw Data format (ISMRMRD) - binaries)
- libismrmrd-dev (ISMRM Raw Data format (ISMRMRD) - development files)
- libismrmrd-doc (ISMRM Raw Data format (ISMRMRD) - documentation)
- libismrmrd1.3 (ISMRM Raw Data format (ISMRMRD) - shared library)
- itksnap
- itksnap (semi-automatic segmentation of structures in 3D images)
- jasp
- jasp (Bayesian statistics made accessible)
- jdcal
- python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
- python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
- joblib
- python-joblib (tools to provide lightweight pipelining in Python)
- python3-joblib (tools to provide lightweight pipelining in Python)
- json-tricks
- pypy-json-tricks (Python module with extra features for JSON files)
- python-json-tricks (Python module with extra features for JSON files)
- python3-json-tricks (Python module with extra features for JSON files)
- klustakwik
- klustakwik (automatic sorting of the samples (spikes) into clusters)
- lazyarray
- python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
- lda
- python-lda (Topic modeling with latent Dirichlet allocation for Python 3)
- python3-lda (Topic modeling with latent Dirichlet allocation)
- libcgroup
- cgroup-bin (Tools to control and monitor control groups)
- libcgroup-dev (Development libraries to develop applications that utilize control groups)
- libcgroup1 (Library to control and monitor control groups)
- libpam-cgroup (PAM module to move a user session into a cgroup)
- libfreenect
- freenect (library for accessing Kinect device – metapackage)
- libfreenect-bin (library for accessing Kinect device – utilities and samples)
- libfreenect-demos (library for accessing Kinect device – dummy package)
- libfreenect-dev (library for accessing Kinect device – development files)
- libfreenect-doc (library for accessing Kinect device – documentation)
- libfreenect0.5 (library for accessing Kinect device)
- python-freenect (library for accessing Kinect device – Python bindings)
- libgdf
- gdf-tools (IO library for the GDF – helper tools)
- libgdf-dev (IO library for the GDF – development library)
- libgdf0 (IO library for the GDF (general dataformat for biosignals))
- matlab-gdf (IO library for the GDF – Matlab interface)
- octave-gdf (IO library for the GDF – Octave interface)
- libguac
- libguac-dev (Development headers for the core Guacamole library)
- libguac3 (Core Guacamole library used by guacd and client plugins)
- libmialm
- libmialm-dev (Development files for the MIA landmark library)
- libmialm-doc (Documentation for the MIA landmark library)
- libmialm3 (Landmark handling for the MIA tool chain)
- libmialm3-dbg (Debug information for the MIA landmark library)
- libqtpas
- libqt5pas-dev (Development files for Qt5Pas)
- libqt5pas1 (Qt5 interface bindings for Pascal)
- libvistaio
- libvistaio-dev (Development files for the libvistaio library)
- libvistaio14 (Library for loading and storing various types of binary data)
- libvistaio14-dbg (Debug information for the libvistaio library)
- matlab-support
- matlab-support (distro integration for local MATLAB installations)
- matlab-support-dev (helpers for packages building MATLAB toolboxes)
- mdp
- python-mdp (Modular toolkit for Data Processing)
- python3-mdp (Modular toolkit for Data Processing)
- melview
- fsl-melview (viewer for the output of FSL’s MELODIC)
- mia
- libmia-2.0-8 (library for 2D and 3D gray scale image processing)
- libmia-2.0-8-dbg (Debug information for the MIA library)
- libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)
- libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)
- mia-tools (Command line tools for gray scale image processing)
- mia-tools-dbg (Debugging information for the MIA command line tools)
- mia-tools-doc (Cross-referenced documentation of the MIA command line tools)
- mialmpick
- mialmpick (Tools for landmark picking in 3D volume data sets)
- mialmpick-dbg (Debug information landmark picking tool mialmpick)
- mpi4py
- python-mpi4py (bindings of the Message Passing Interface (MPI) standard)
- python-mpi4py-dbg (bindings of the MPI standard – debug symbols)
- python-mpi4py-doc (bindings of the MPI standard – documentation)
- python3-mpi4py (bindings of the Message Passing Interface (MPI) standard)
- python3-mpi4py-dbg (bindings of the MPI standard – debug symbols)
- mriconvert
- mriconvert (medical image file conversion utility)
- mricron
- mricron (magnetic resonance image conversion, viewing and analysis)
- mricron-data (data files for MRIcron)
- mricron-doc (data files for MRIcron)
- mridefacer
- mridefacer (de-identification of MRI data)
- mrtrix
- mrtrix (diffusion-weighted MRI white matter tractography)
- mrtrix-doc (documentation for mrtrix)
- mrtrix3
- mrtrix3 (diffusion-weighted MRI white matter tractography)
- mrtrix3-doc (documentation for mrtrix3)
- msgpack-python
- python-msgpack (Python implementation of MessagePack format)
- python3-msgpack (Python 3 implementation of MessagePack format)
- mutagen
- python-mutagen (audio metadata editing library)
- python-mutagen-doc (audio metadata editing library - documentation)
- python3-mutagen (audio metadata editing library (Python 3))
- mwrap
- mwrap (Octave/MATLAB mex generator)
- ncdu
- ncdu (ncurses disk usage viewer)
- neo
- python3-neo (Python IO library for electrophysiological data formats)
- netselect
- netselect (speed tester for choosing a fast network server)
- netselect-apt (speed tester for choosing a fast Debian mirror)
- neurodebian
- neurodebian (neuroscience-oriented distribution - repository configuration)
- neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)
- neurodebian-desktop (neuroscience-oriented distribution - desktop integration)
- neurodebian-dev (neuroscience-oriented distribution - development tools)
- neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)
- neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)
- nibabel
- python-nibabel (Python bindings to various neuroimaging data formats)
- python-nibabel-doc (documentation for NiBabel)
- python3-nibabel (Python3 bindings to various neuroimaging data formats)
- nifti2dicom
- nifti2dicom (convert 3D medical images to DICOM 2D series)
- nifti2dicom-data (data files for nifti2dicom)
- nifti2dicom-dbg (convert 3D medical images to DICOM 2D series (debug symbols))
- qnifti2dicom (convert 3D medical images to DICOM 2D series (gui))
- nifticlib
- libnifti-dev (IO libraries for the NIfTI-1 data format)
- libnifti-doc (NIfTI library API documentation)
- libnifti2 (IO libraries for the NIfTI-1 data format)
- nifti-bin (tools shipped with the NIfTI library)
- nilearn
- python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
- python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
- nipy
- python-nipy-doc (documentation and examples for NiPy)
- python3-nipy (Analysis of structural and functional neuroimaging data)
- python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
- python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))
- nipype
- python-nipype (Neuroimaging data analysis pipelines in Python)
- python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
- nitime
- python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
- python3-nitime (timeseries analysis for neuroscience data (nitime))
- nlopt
- libnlopt-dev (nonlinear optimization library – development package)
- libnlopt-guile0 (nonlinear optimization library – Guile bindings)
- libnlopt0 (nonlinear optimization library)
- octave-nlopt (nonlinear optimization library – GNU Octave package)
- python-nlopt (nonlinear optimization library – Python bindings)
- nosexcover
- python-nosexcover (Add Cobertura-style XML coverage report to nose)
- python3-nosexcover (Add Cobertura-style XML coverage report to nose)
- nuitka
- nuitka (Python compiler with full language support and CPython compatibility)
- numdiff
- numdiff (Compare similar files with numeric fields)
- numexpr
- python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
- python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
- obs-studio
- libobs-dev (recorder and streamer for live video content (development files))
- libobs0 (recorder and streamer for live video content (shared library))
- obs-plugins (recorder and streamer for live video content (plugins))
- obs-studio (recorder and streamer for live video content)
- odin
- libodin-dev (static libraries and header for ODIN sequences)
- mitools (view, convert and perform basic maths with medical image datasets)
- odin (develop, simulate and run magnetic resonance sequences)
- openopt
- python-openopt (Python module for numerical optimization)
- openpyxl
- python-openpyxl (Python module to read/write OpenXML xlsx/xlsm files)
- python3-openpyxl (Python 3 module to read/write OpenXML xlsx/xlsm files)
- openstack-pkg-tools
- openstack-pkg-tools (Tools and scripts for building Openstack packages in Debian)
- openwalnut
- libopenwalnut1 (Framework for multi-modal medical and brain data visualization)
- libopenwalnut1-dev (Development files for the OpenWalnut visualization framework)
- libopenwalnut1-doc (Developer documentation for the OpenWalnut visualization framework)
- openwalnut-modules (Loaders, algorithms and visualization modules for OpenWalnut)
- openwalnut-qt4 (Qt based user interface for OpenWalnut)
- p7zip
- p7zip (7zr file archiver with high compression ratio)
- p7zip-full (7z and 7za file archivers with high compression ratio)
- pandas
- python-pandas (data structures for “relational” or “labeled” data)
- python-pandas-doc (documentation and examples for pandas)
- python-pandas-lib (low-level implementations and bindings for pandas)
- python3-pandas (data structures for “relational” or “labeled” data - Python 3)
- python3-pandas-lib (low-level implementations and bindings for pandas - Python 3)
- parallelpython
- python-pp (parallel and distributed programming toolkit for Python)
- patool
- patool (command line archive file manager)
- patsy
- python-patsy (statistical models in Python using symbolic formulas)
- python-patsy-doc (documentation and examples for patsy)
- python3-patsy (statistical models in Python using symbolic formulas)
- pprocess
- python-pprocess (elementary parallel programming for Python)
- props
- python-props (Python descriptor framework)
- psignifit3
- python-pypsignifit (psychometric analysis of psychophysics data in Python)
- psychopy
- psychopy (environment for creating psychology stimuli in Python)
- psychtoolbox-3
- octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
- psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
- psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
- psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)
- psychtoolbox-3-nonfree
- matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
- matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
- octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)
- pycharm-community-sloppy
- pycharm-community-sloppy (PyCharm IDE (sloppy packaging))
- pydicom
- python-dicom (transitional package for python-pydicom)
- python-pydicom (DICOM medical file reading and writing (Python 2))
- python-pydicom-doc (DICOM medical file reading and writing (documentation))
- python3-dicom (transitional package for python3-pydicom)
- python3-pydicom (DICOM medical file reading and writing (Python 3))
- pydot
- python-pydot (Python interface to Graphviz’s dot)
- python3-pydot (Python interface to Graphviz’s dot (Python 3))
- pyentropy
- python-pyentropy (Python module for estimation information theoretic quantities)
- pyepl
- python-pyepl (module for coding psychology experiments in Python)
- python-pyepl-common (module for coding psychology experiments in Python)
- pygithub
- python-github (Access to full Github API v3 from Python2)
- python3-github (Access the full Github API v3 from Python3)
- pyglet
- python3-pyglet (cross-platform windowing and multimedia library (Python 3))
- pymc
- python-pymc (Bayesian statistical models and fitting algorithms)
- python-pymc-doc (Bayesian statistical models and fitting algorithms)
- pymvpa
- python-mvpa (multivariate pattern analysis with Python)
- python-mvpa-doc (documentation and examples for PyMVPA)
- python-mvpa-lib (low-level implementations and bindings for PyMVPA)
- pymvpa2
- python-mvpa2 (multivariate pattern analysis with Python v. 2)
- python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
- python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
- pynifti
- python-nifti (Python interface to the NIfTI I/O libraries)
- pynn
- python-pynn (simulator-independent specification of neuronal network models)
- pynwb
- python3-pynwb (Python library for working with Neurodata in the NWB format)
- pysurfer
- python-surfer (visualize Freesurfer’s data in Python)
- pytables
- python-tables (hierarchical database for Python based on HDF5)
- python-tables-data (hierarchical database for Python based on HDF5 - test data)
- python-tables-dbg (hierarchical database for Python based on HDF5 (debug extension))
- python-tables-doc (hierarchical database for Python based on HDF5 - documentation)
- python-tables-lib (hierarchical database for Python based on HDF5 (extension))
- python3-tables (hierarchical database for Python3 based on HDF5)
- python3-tables-dbg (hierarchical database for Python 3 based on HDF5 (debug extension))
- python3-tables-lib (hierarchical database for Python3 based on HDF5 (extension))
- pytest
- pypy-pytest (Simple, powerful testing in PyPy)
- python-pytest (Simple, powerful testing in Python)
- python-pytest-doc (Simple, powerful testing in Python - Documentation)
- python3-pytest (Simple, powerful testing in Python3)
- pytest-localserver
- python-pytest-localserver (py.test plugin to test server connections locally (Python 2))
- python3-pytest-localserver (py.test plugin to test server connections locally (Python 3))
- pytest-tornado
- python-pytest-tornado (py.test plugin to test Tornado applications)
- python3-pytest-tornado (py.test plugin to test Tornado applications (Python 3))
- python-argcomplete
- python-argcomplete (bash tab completion for argparse)
- python3-argcomplete (bash tab completion for argparse (for Python 3))
- python-babel
- python-babel (tools for internationalizing Python applications - Python 2.x)
- python-babel-doc (tools for internationalizing Python applications - documentation)
- python-babel-localedata (tools for internationalizing Python applications - locale data files)
- python3-babel (tools for internationalizing Python applications - Python 3.x)
- python-boto
- python-boto (Python interface to Amazon’s Web Services - Python 2.x)
- python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
- python-boto3
- python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
- python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
- python-bz2file
- python-bz2file (Python library for reading and writing bzip2-compressed files)
- python3-bz2file (Python3 library for reading and writing bzip2-compressed files)
- python-click
- python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)
- python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)
- python-deprecation
- python-deprecation (Library to handle automated deprecations - Python 2.x)
- python3-deprecation (Library to handle automated deprecations - Python 3.x)
- python-docker
- python-docker (Python wrapper to access docker.io’s control socket)
- python3-docker (Python 3 wrapper to access docker.io’s control socket)
- python-exif
- python-exif (Python library to extract Exif data from TIFF and JPEG files)
- python3-exif (Python library to extract Exif data from TIFF and JPEG files)
- python-expyriment
- python-expyriment (Python library for cognitive and neuroscientific experiments)
- python-fasteners
- python-fasteners (provides useful locks - Python 2.7)
- python3-fasteners (provides useful locks - Python 3.x)
- python-filelock
- python-filelock (platform independent file locking module (Python 2))
- python3-filelock (platform independent file locking module (Python 3))
- python-funcsigs
- python-funcsigs (function signatures from PEP362 - Python 2.7)
- python-funcsigs-doc (function signatures from PEP362 - doc)
- python3-funcsigs (function signatures from PEP362 - Python 3.x)
- python-future
- python-future (single-source support for Python 3 and 2 - Python 2.x)
- python-future-doc (Clean single-source support for Python 3 and 2 - doc)
- python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)
- python-git
- python-git-doc (Python library to interact with Git repositories - docs)
- python3-git (Python library to interact with Git repositories - Python 3.x)
- python-gitdb
- python-gitdb (pure-Python git object database (Python 2))
- python3-gitdb (pure-Python git object database (Python 3))
- python-httpretty
- python-httpretty (HTTP client mock - Python 2.x)
- python3-httpretty (HTTP client mock - Python 3.x)
- python-humanize
- python-humanize (Python Humanize library (Python 2))
- python3-humanize (Python Humanize library (Python 3))
- python-hypothesis
- pypy-hypothesis (advanced Quickcheck style testing library for PyPy)
- python-hypothesis (advanced Quickcheck style testing library for Python 2)
- python-hypothesis-doc (advanced Quickcheck style testing library (documentation))
- python3-hypothesis (advanced Quickcheck style testing library for Python 3)
- python-jsmin
- python-jsmin (JavaScript minifier written in Python - Python 2.x)
- python3-jsmin (JavaScript minifier written in Python - Python 3.x)
- python-mne
- python-mne (Python modules for MEG and EEG data analysis)
- python-monotonic
- python-monotonic (implementation of time.monotonic() - Python 2.x)
- python3-monotonic (implementation of time.monotonic() - Python 3.x)
- python-neuroshare
- python-neuroshare (Python interface and tools for Neuroshare)
- python-neuroshare-doc (Python interface and tools for Neuroshare)
- python-packaging
- python-packaging (core utilities for python packages)
- python3-packaging (core utilities for python packages)
- python-prov
- prov-tools (tools for prov)
- python-prov (W3C Provenance Data Model (Python 2))
- python-prov-doc (documentation for prov)
- python3-prov (W3C Provenance Data Model (Python 3))
- python-psutil
- python-psutil (module providing convenience functions for managing processes)
- python3-psutil (module providing convenience functions for managing processes (Python3))
- python-py
- pypy-py (Advanced Python development support library (PyPy))
- python-py (Advanced Python development support library (Python 2))
- python3-py (Advanced Python development support library (Python 3))
- python-pydotplus
- python-pydotplus (interface to Graphviz’s Dot language - Python 2.7)
- python-pydotplus-doc (interface to Graphviz’s Dot language - doc)
- python3-pydotplus (interface to Graphviz’s Dot language - Python 3.x)
- python-pygraphviz
- python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
- python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
- python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
- python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
- python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
- python-pyperclip
- python-pyperclip (Cross-platform clipboard module for Python)
- python3-pyperclip (Cross-platform clipboard module for Python3)
- python-quantities
- python3-quantities (Library for computation of physical quantities with units, based on numpy)
- python-rpaths
- python-rpaths-doc (documentation for rpaths)
- python3-rpaths (cross-platform path manipulation library for Python)
- python-scrapy
- python-scrapy (Python web scraping and crawling framework)
- python-scrapy-doc (Python web scraping and crawling framework documentation)
- python-setuptools
- pypy-pkg-resources (Package Discovery and Resource Access using pkg_resources)
- pypy-setuptools (PyPy Distutils Enhancements)
- python-pkg-resources (Package Discovery and Resource Access using pkg_resources)
- python-setuptools (Python Distutils Enhancements)
- python-setuptools-doc (Python Distutils Enhancements (documentation))
- python3-pkg-resources (Package Discovery and Resource Access using pkg_resources)
- python3-setuptools (Python3 Distutils Enhancements)
- python-smmap
- python-smmap (pure Python implementation of a sliding window memory map manager)
- python3-smmap (pure Python implementation of a sliding window memory map manager)
- python-tornado
- python-tornado (scalable, non-blocking web server and tools)
- python-traits
- python-traits4 (Manifest typing and reactive programming for Python)
- python-tz
- python-tz (Python version of the Olson timezone database)
- python-urllib3
- python-urllib3 (HTTP library with thread-safe connection pooling for Python)
- python-urllib3-whl (HTTP library with thread-safe connection pooling)
- python3-urllib3 (HTTP library with thread-safe connection pooling for Python3)
- python-w3lib
- python-w3lib (Collection of web-related functions for Python (Python 2))
- python3-w3lib (Collection of web-related functions for Python (Python 3))
- python-werkzeug
- python-werkzeug (collection of utilities for WSGI applications)
- python-werkzeug-doc (documentation for the werkzeug Python library)
- python3-werkzeug (collection of utilities for WSGI applications)
- python-whoosh
- python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
- python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
- python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
- python-wrapt
- python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
- python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
- python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
- python-xmp-toolkit
- python-libxmp (Python library for XMP metadata)
- python-libxmp-doc (Python library for XMP metadata - documentation)
- python3-libxmp (Python3 library for XMP metadata)
- pyxid
- python-pyxid (interface for Cedrus XID and StimTracker devices)
- rclone
- golang-github-ncw-rclone-dev (go source code of rclone)
- rclone (rsync for commercial cloud storage)
- rdflib
- python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)
- python-rdflib-doc (Python library containing an RDF triple store [...] (documentation))
- python-rdflib-tools (Python tools for converting to and from RDF)
- python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)
- remake
- remake (GNU make fork with improved error reporting and debugging)
- reprozip
- python3-reprozip (modules for the ReproZip packer)
- python3-reprozip-dbg (debug extensions for the ReproZip packer)
- reprozip (tool for reproducing scientific experiments (packer))
- requests
- python-requests (elegant and simple HTTP library for Python2, built for human beings)
- python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
- python3-requests (elegant and simple HTTP library for Python3, built for human beings)
- rtfilter
- librtfilter-dev (realtime digital filtering library (development files))
- librtfilter1 (realtime digital filtering library)
- librtfilter1-dbg (realtime digital filtering library (debugging symbols))
- scikit-learn
- python-sklearn (Python modules for machine learning and data mining)
- python-sklearn-doc (documentation and examples for scikit-learn)
- python-sklearn-lib (low-level implementations and bindings for scikit-learn)
- python3-sklearn (Python modules for machine learning and data mining - Python 3)
- python3-sklearn-lib (low-level implementations and bindings for scikit-learn - Python 3)
- seaborn
- python-seaborn (statistical visualization library)
- python3-seaborn (statistical visualization library)
- setuptools-scm
- python-setuptools-scm (blessed package to manage your versions by scm tags for Python 2)
- python3-setuptools-scm (blessed package to manage your versions by scm tags for Python 3)
- sigviewer
- sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
- simplegeneric
- python-simplegeneric (Simple generic functions for Python)
- singularity-container
- singularity-container (container platform focused on supporting “Mobility of Compute”)
- six
- pypy-six (Python 2 and 3 compatibility library (PyPy interface))
- python-six (Python 2 and 3 compatibility library (Python 2 interface))
- python3-six (Python 2 and 3 compatibility library (Python 3 interface))
- sparql-wrapper-python
- python-sparqlwrapper (SPARQL endpoint interface to Python)
- python3-sparqlwrapper (SPARQL endpoint interface to Python3)
- sphinx
- python-sphinx (tool for producing documentation for Python projects)
- sphinx-gallery
- python-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts)
- python-sphinx-gallery-doc (extension that builds an HTML gallery of examples from Python scripts (Doc))
- python3-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts (Python 3))
- sphinx-rtd-theme
- python-sphinx-rtd-theme (sphinx theme from readthedocs.org (Python 2))
- python3-sphinx-rtd-theme (sphinx theme from readthedocs.org (Python 3))
- spm8
- matlab-spm8 (analysis of brain imaging data sequences for Matlab)
- spm8-common (analysis of brain imaging data sequences)
- spm8-data (data files for SPM8)
- spm8-doc (manual for SPM8)
- spyder
- python-spyderlib (python IDE for scientists)
- spyder (python IDE for scientists)
- spykeutils
- python-spykeutils (utilities for analyzing electrophysiological data)
- spykeviewer
- spykeviewer (graphical utility for analyzing electrophysiological data)
- stabilitycalc
- stabilitycalc (evaluate fMRI scanner stability)
- statsmodels
- python-statsmodels (Python module for the estimation of statistical models)
- python-statsmodels-doc (documentation and examples for statsmodels)
- python-statsmodels-lib (low-level implementations and bindings for statsmodels)
- python3-statsmodels (Python3 module for the estimation of statistical models)
- python3-statsmodels-lib (Python3 low-level implementations and bindings for statsmodels)
- stimfit
- python-stfio (Python module to read common electrophysiology file formats.)
- stimfit (Program for viewing and analyzing electrophysiological data)
- stimfit-dbg (Debug symbols for stimfit)
- svgtune
- svgtune (tool to generate a set of .svg files out of a single .svg file)
- sympy
- isympy-common (Python shell for SymPy)
- isympy3 (Python3 shell for SymPy)
- python-sympy (Computer Algebra System (CAS) in Python)
- python-sympy-doc (Computer Algebra System (CAS) in Python - Documentation)
- python3-sympy (Computer Algebra System (CAS) in Python (Python3))
- tigervnc
- tigervnc-common (Virtual network computing; Common software needed by clients and servers)
- tigervnc-scraping-server (Virtual network computing server software)
- tigervnc-standalone-server (Virtual network computing server software)
- tigervnc-viewer (Virtual network computing client software for X)
- tigervnc-xorg-extension (Virtual network computing server software)
- tqdm
- python-tqdm (fast, extensible progress bar for Python 2)
- python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
- ubuntu-keyring
- ubuntu-keyring (GnuPG keys of the Ubuntu archive)
- ubuntu-keyring-udeb ()
- utopia-documents
- utopia-documents (PDF reader that displays interactive annotations on scientific articles)
- utopia-documents-dbg (debugging symbols for utopia-documents)
- vcr.py
- python-vcr (record and replay HTML interactions (Python library))
- python3-vcr (record and replay HTML interactions (Python3 library))
- visionegg
- python-visionegg (Python library for 2D/3D visual stimulus generation)
- vmri-nonfree
- virtual-mri-nonfree (Virtual Magnetic Resonance Imager)
- vowpal-wabbit
- libvw-dev (fast and scalable online machine learning algorithm - development files)
- libvw0 (fast and scalable online machine learning algorithm - dynamic library)
- vowpal-wabbit (fast and scalable online machine learning algorithm)
- vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
- vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
- vrpn
- libvrpn-dev (Virtual Reality Peripheral Network (development files))
- libvrpn0 (Virtual Reality Peripheral Network (client library))
- libvrpnserver0 (Virtual Reality Peripheral Network (server library))
- vrpn (Virtual Reality Peripheral Network (executables))
- vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
- vtk-dicom
- libvtk-dicom-java (DICOM for VTK - java)
- libvtk-dicom0.5 (DICOM for VTK - lib)
- libvtk-dicom0.5-dev (DICOM for VTK - dev)
- python-vtk-dicom (DICOM for VTK - python)
- vtk-dicom-tools (DICOM for VTK - tools)
- xdffileio
- libxdffileio-dev (Library to read/write EEG data file formats (development files))
- libxdffileio0 (Library to read/write EEG data file formats)
- libxdffileio0-dbg (Library to read/write EEG data file formats (debugging symbols))
- xlwt
- python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
- python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
- python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)
- xppaut
- xppaut (Phase Plane Plus Auto: Solves many kinds of equations)