Packages for Debian GNU/Linux 9.0 (stretch)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)

  • afni-common (miscellaneous scripts and data files for AFNI)

  • afni-dbg (debug symbols for AFNI)

  • afni-dev (header and static libraries for AFNI plugin development)

afni-data
aghermann
  • aghermann (Sleep-research experiment manager)

annexremote
ants
  • ants (advanced normalization tools for brain and image analysis)

asciidoctor
bats
  • bats (bash automated testing system)

biosig4c++
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)

btrfs-tools
cctools
cde
  • cde (package everything required to execute a Linux command on another computer)

cfflib
  • python-cfflib (Multi-modal connectome and metadata management and integration)

chardet
citeproc-py
cmtk
  • cmtk (Computational Morphometry Toolkit)

cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))

  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))

  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))

  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))

condor
  • htcondor (distributed workload management system)

  • htcondor-dbg (distributed workload management system - debugging symbols)

  • htcondor-dev (distributed workload management system - development files)

  • htcondor-doc (distributed workload management system - documentation)

  • libclassad-dev (HTCondor classads expression language - development library)

  • libclassad8 (HTCondor classads expression language - runtime library)

connectome-workbench
connectomeviewer
contextlib2
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)

copyq
  • copyq (Advanced clipboard manager with editing and scripting features)

  • copyq-doc (Documentation and examples for CopyQ - HTML format)

  • copyq-plugins (Plugins for CopyQ)

cython
  • cython (C-Extensions for Python)

  • cython-dbg (C-Extensions for Python - debug build)

datalad
  • datalad (data files management and distribution platform)

  • python3-datalad (data files management and distribution platform)

datalad-container
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack
debhelper
debian-handbook
  • debian-handbook (reference book for Debian users and system administrators)

debruijn
dh-autoreconf
  • dh-autoreconf (debhelper add-on to call autoreconf and clean up after the build)

dh-octave
  • dh-octave (Debhelper-based infrastructure for building Octave add-on packages)

  • dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)

dh-python
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)

dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)

  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)

  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

diskcache
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)

  • dmtcp-dbg (Debug package for dmtcp)

docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)

dockerpty
double-conversion
duecredit
dwz
  • dwz (DWARF compression tool)

edac-utils
  • edac-utils (report kernel-detected PCI and ECC RAM errors)

  • libedac-dev (report kernel-detected PCI and ECC RAM errors)

  • libedac1 (report kernel-detected PCI and ECC RAM errors)

  • libedac1-dbg (report kernel-detected PCI and ECC RAM errors)

eeglab11
exempi
  • exempi (command line tool to manipulate XMP metadata)

  • libexempi-dev (library to parse XMP metadata (Development files))

  • libexempi3 (library to parse XMP metadata (Library))

fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)

freeipmi
fsl
  • fsl (transitional dummy package)

  • fsl-5.0 (transitional dummy package)

  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)

  • fsl-core (metapackage for the latest version of FSL)

fsl-eddy-nonfree
fsleyes
fsleyes-props
fsleyes-widgets
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))

  • fsl-complete (metapackage for the entire FSL suite (tools and data))

fslpy
fslview
gcalcli
  • gcalcli (Google Calendar Command Line Interface)

gifticlib
  • gifti-bin (tools shipped with the GIFTI library)

  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)

  • libgiftiio0 (IO library for the GIFTI cortical surface data format)

git
  • git (fast, scalable, distributed revision control system)

  • git-all (fast, scalable, distributed revision control system (all subpackages))

  • git-cvs (fast, scalable, distributed revision control system (cvs interoperability))

  • git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))

  • git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))

  • git-doc (fast, scalable, distributed revision control system (documentation))

  • git-el (fast, scalable, distributed revision control system (emacs support))

  • git-email (fast, scalable, distributed revision control system (email add-on))

  • git-gui (fast, scalable, distributed revision control system (GUI))

  • git-man (fast, scalable, distributed revision control system (manual pages))

  • git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))

  • git-svn (fast, scalable, distributed revision control system (svn interoperability))

  • gitk (fast, scalable, distributed revision control system (revision tree visualizer))

  • gitweb (fast, scalable, distributed revision control system (web interface))

git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)

git-annex-adapter
git-annex-metadata-gui
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)

glew
glm
  • libglm-dev (C++ library for OpenGL GLSL type-based mathematics)

  • libglm-doc (documentation for the OpenGL Mathematics (GLM) library)

gmsl
  • gmsl (extra functions to extend functionality of GNU Makefiles)

guacamole-client
  • guacamole (HTML5 web application for accessing remote desktops)

  • guacamole-tomcat (Tomcat-based Guacamole install with VNC support)

guacamole-server
h5py
haskell-network-protocol-xmpp
haskell-optparse-applicative
hdmf
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)

impressive
  • impressive (PDF presentation tool with eye candies)

incf-nidash-oneclick
indexed-gzip
init-system-helpers
insighttoolkit4
ismrmrd
itksnap
  • itksnap (semi-automatic segmentation of structures in 3D images)

jasp
  • jasp (Bayesian statistics made accessible)

jdcal
  • python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)

  • python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)

joblib
json-tricks
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)

lazyarray
  • python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)

lda
  • python-lda (Topic modeling with latent Dirichlet allocation for Python 3)

  • python3-lda (Topic modeling with latent Dirichlet allocation)

libcgroup
  • cgroup-bin (Tools to control and monitor control groups)

  • libcgroup-dev (Development libraries to develop applications that utilize control groups)

  • libcgroup1 (Library to control and monitor control groups)

  • libpam-cgroup (PAM module to move a user session into a cgroup)

libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)

  • libgdf-dev (IO library for the GDF – development library)

  • libgdf0 (IO library for the GDF (general dataformat for biosignals))

  • matlab-gdf (IO library for the GDF – Matlab interface)

  • octave-gdf (IO library for the GDF – Octave interface)

libguac
  • libguac-dev (Development headers for the core Guacamole library)

  • libguac3 (Core Guacamole library used by guacd and client plugins)

libmialm
  • libmialm-dev (Development files for the MIA landmark library)

  • libmialm-doc (Documentation for the MIA landmark library)

  • libmialm3 (Landmark handling for the MIA tool chain)

  • libmialm3-dbg (Debug information for the MIA landmark library)

libqtpas
libvistaio
matlab-support
mdp
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)

mia
  • libmia-2.0-8 (library for 2D and 3D gray scale image processing)

  • libmia-2.0-8-dbg (Debug information for the MIA library)

  • libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)

  • libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)

  • mia-tools (Command line tools for gray scale image processing)

  • mia-tools-dbg (Debugging information for the MIA command line tools)

  • mia-tools-doc (Cross-referenced documentation of the MIA command line tools)

mialmpick
  • mialmpick (Tools for landmark picking in 3D volume data sets)

  • mialmpick-dbg (Debug information landmark picking tool mialmpick)

mpi4py
mriconvert
  • mriconvert (medical image file conversion utility)

mricron
mridefacer
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)

  • mrtrix-doc (documentation for mrtrix)

mrtrix3
  • mrtrix3 (diffusion-weighted MRI white matter tractography)

  • mrtrix3-doc (documentation for mrtrix3)

msgpack-python
mutagen
mwrap
  • mwrap (Octave/MATLAB mex generator)

ncdu
  • ncdu (ncurses disk usage viewer)

neo
  • python3-neo (Python IO library for electrophysiological data formats)

netselect
  • netselect (speed tester for choosing a fast network server)

  • netselect-apt (speed tester for choosing a fast Debian mirror)

neurodebian
nibabel
nifti2dicom
nifticlib
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))

  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))

nipy
  • python-nipy-doc (documentation and examples for NiPy)

  • python3-nipy (Analysis of structural and functional neuroimaging data)

  • python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))

  • python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipype
nitime
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)

  • python3-nitime (timeseries analysis for neuroscience data (nitime))

nlopt
  • libnlopt-dev (nonlinear optimization library – development package)

  • libnlopt-guile0 (nonlinear optimization library – Guile bindings)

  • libnlopt0 (nonlinear optimization library)

  • octave-nlopt (nonlinear optimization library – GNU Octave package)

  • python-nlopt (nonlinear optimization library – Python bindings)

nosexcover
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)

numdiff
  • numdiff (Compare similar files with numeric fields)

numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)

  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)

obs-studio
  • libobs-dev (recorder and streamer for live video content (development files))

  • libobs0 (recorder and streamer for live video content (shared library))

  • obs-plugins (recorder and streamer for live video content (plugins))

  • obs-studio (recorder and streamer for live video content)

odin
  • libodin-dev (static libraries and header for ODIN sequences)

  • mitools (view, convert and perform basic maths with medical image datasets)

  • odin (develop, simulate and run magnetic resonance sequences)

openopt
openpyxl
openstack-pkg-tools
openwalnut
p7zip
  • p7zip (7zr file archiver with high compression ratio)

  • p7zip-full (7z and 7za file archivers with high compression ratio)

pandas
parallelpython
  • python-pp (parallel and distributed programming toolkit for Python)

patool
  • patool (command line archive file manager)

patsy
pprocess
props
psignifit3
psychopy
  • psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pydot
pyentropy
  • python-pyentropy (Python module for estimation information theoretic quantities)

pyepl
pygithub
pyglet
  • python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pymc
  • python-pymc (Bayesian statistical models and fitting algorithms)

  • python-pymc-doc (Bayesian statistical models and fitting algorithms)

pymvpa2
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)

pynn
  • python-pynn (simulator-independent specification of neuronal network models)

pynwb
  • python3-pynwb (Python library for working with Neurodata in the NWB format)

pysurfer
pytables
pytest
pytest-localserver
pytest-tornado
python-argcomplete
python-babel
  • python-babel (tools for internationalizing Python applications - Python 2.x)

  • python-babel-doc (tools for internationalizing Python applications - documentation)

  • python-babel-localedata (tools for internationalizing Python applications - locale data files)

  • python3-babel (tools for internationalizing Python applications - Python 3.x)

python-boto
  • python-boto (Python interface to Amazon’s Web Services - Python 2.x)

  • python3-boto (Python interface to Amazon’s Web Services - Python 3.x)

python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)

  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)

python-bz2file
  • python-bz2file (Python library for reading and writing bzip2-compressed files)

  • python3-bz2file (Python3 library for reading and writing bzip2-compressed files)

python-click
  • python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)

  • python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)

python-deprecation
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)

  • python3-docker (Python 3 wrapper to access docker.io’s control socket)

python-exif
  • python-exif (Python library to extract Exif data from TIFF and JPEG files)

  • python3-exif (Python library to extract Exif data from TIFF and JPEG files)

python-expyriment
python-fasteners
python-filelock
python-funcsigs
python-future
  • python-future (single-source support for Python 3 and 2 - Python 2.x)

  • python-future-doc (Clean single-source support for Python 3 and 2 - doc)

  • python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)

python-git
  • python-git-doc (Python library to interact with Git repositories - docs)

  • python3-git (Python library to interact with Git repositories - Python 3.x)

python-gitdb
python-httpretty
python-humanize
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)

  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)

python-mne
  • python-mne (Python modules for MEG and EEG data analysis)

python-monotonic
python-neuroshare
python-packaging
python-prov
python-psutil
  • python-psutil (module providing convenience functions for managing processes)

  • python3-psutil (module providing convenience functions for managing processes (Python3))

python-py
  • pypy-py (Advanced Python development support library (PyPy))

  • python-py (Advanced Python development support library (Python 2))

  • python3-py (Advanced Python development support library (Python 3))

python-pydotplus
python-pyfakefs
  • python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)

python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)

  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))

  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))

  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))

  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))

python-pyperclip
python-quantities
  • python3-quantities (Library for computation of physical quantities with units, based on numpy)

python-rpaths
python-scrapy
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)

  • python3-smmap (pure Python implementation of a sliding window memory map manager)

python-tornado
python-traits
  • python-traits4 (Manifest typing and reactive programming for Python)

python-tz
  • python-tz (Python version of the Olson timezone database)

python-urllib3
python-w3lib
  • python-w3lib (Collection of web-related functions for Python (Python 2))

  • python3-w3lib (Collection of web-related functions for Python (Python 3))

python-werkzeug
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))

  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))

  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))

python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)

  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)

  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)

python-xmp-toolkit
pyxid
  • python3-pyxid (interface for Cedrus XID and StimTracker devices)

rclone
rdflib
  • python-rdflib (Python library containing an RDF triple store and RDF parsers/serializers)

  • python-rdflib-doc (Python library containing an RDF triple store […] (documentation))

  • python-rdflib-tools (Python tools for converting to and from RDF)

  • python3-rdflib (Python 3 library containing an RDF triple store and RDF parsers/serializers)

remake
  • remake (GNU make fork with improved error reporting and debugging)

reprozip
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)

  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)

  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)

rtfilter
s3cmd
  • s3cmd (command-line Amazon S3 client)

scikit-learn
seaborn
setuptools-scm
sigviewer
  • sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)

simplegeneric
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))

  • python-six (Python 2 and 3 compatibility library (Python 2 interface))

  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))

sparql-wrapper-python
sphinx
  • python-sphinx (tool for producing documentation for Python projects)

sphinx-gallery
sphinx-rtd-theme
spm8
spyder
spykeutils
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)

stabilitycalc
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)

  • stimfit (Program for viewing and analyzing electrophysiological data)

  • stimfit-dbg (Debug symbols for stimfit)

svgtune
  • svgtune (tool to generate a set of .svg files out of a single .svg file)

sympy
tigervnc
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)

  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)

ubuntu-keyring
utopia-documents
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))

  • python3-vcr (record and replay HTML interactions (Python3 library))

visionegg
vmri-nonfree
vowpal-wabbit
  • libvw-dev (fast and scalable online machine learning algorithm - development files)

  • libvw0 (fast and scalable online machine learning algorithm - dynamic library)

  • vowpal-wabbit (fast and scalable online machine learning algorithm)

  • vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)

  • vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)

vrpn
  • libvrpn-dev (Virtual Reality Peripheral Network (development files))

  • libvrpn0 (Virtual Reality Peripheral Network (client library))

  • libvrpnserver0 (Virtual Reality Peripheral Network (server library))

  • vrpn (Virtual Reality Peripheral Network (executables))

  • vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))

vtk-dicom
xdffileio
xlwt
  • python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)

  • python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)

  • python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)

xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)

youtube-dl
  • youtube-dl (downloader of videos from YouTube and other sites)

Comments

blog comments powered by Disqus