Packages made by NeuroDebian Maintainers <team@neuro.debian.net>

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
afni-data
aghermann
  • aghermann (Sleep-research experiment manager)
ants
  • ants (advanced normalization tools for brain and image analysis)
autotools-dev
  • autotools-dev (Update infrastructure for config.{guess,sub} files)
bats
  • bats (bash automated testing system)
biosig4c++
brian
btrbk
  • btrbk (backup tool for btrfs subvolumes)
btrfs-tools
caret
  • caret (Computerized Anatomical Reconstruction and Editing Toolkit)
caret-data
cctools
cde
  • cde (package everything required to execute a Linux command on another computer)
cfflib
  • python-cfflib (Multi-modal connectome and metadata management and integration)
citeproc-py
cmtk
  • cmtk (Computational Morphometry Toolkit)
cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))
  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))
  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))
  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))
condor
connectome-workbench
connectomeviewer
contextlib2
cython
  • cython (C-Extensions for Python)
  • cython-dbg (C-Extensions for Python (Debug Build of Cython))
datalad
  • datalad (data files crawler and data distribution)
  • python-datalad (data files crawler and data distribution (Python 2))
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debhelper
  • debhelper (helper programs for debian/rules)
debian-handbook
  • debian-handbook (reference book for Debian users and system administrators)
debruijn
dh-python
  • dh-python (Debian helper tools for packaging Python libraries and applications)
dicomnifti
  • dicomnifti (converts DICOM files into the NIfTI format)
dipy
  • python-dipy (toolbox for analysis of MR diffusion imaging data)
  • python-dipy-doc (toolbox for analysis of MR diffusion imaging data – documentation)
  • python-dipy-lib (toolbox for analysis of MR diffusion imaging data – extensions)
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)
  • dmtcp-dbg (Debug package for dmtcp)
docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)
dockerpty
docopt
double-conversion
drawtk
  • libdrawtk-dev (Library to simple and efficient 2D drawings (development files))
  • libdrawtk0 (Library to simple and efficient 2D drawings)
  • libdrawtk0-dbg (Library to simple and efficient 2D drawings (debugging symbols))
duecredit
edac-utils
  • edac-utils (report kernel-detected PCI and ECC RAM errors)
  • libedac-dev (report kernel-detected PCI and ECC RAM errors)
  • libedac1 (report kernel-detected PCI and ECC RAM errors)
  • libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
eegdev
eeglab11
eegview
  • eegview (Software to display EEG data in realtime)
eigen3
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)
fis-gtm
  • fis-gtm (metapackage for the latest version of FIS-GT.M database)
  • fis-gtm-6.0-003 (package for FIS-GT.M database)
freeipmi
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsl-eddy-nonfree
fsl-feeds
  • fsl-feeds (FSL Evaluation and Example Data Suite)
fsldata
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslview
gcalcli
  • gcalcli (Google Calendar Command Line Interface)
gccxml
  • gccxml (XML output extension to GCC)
  • libgccxml-dev (Libraries for building extension to gccxml output)
gifticlib
  • gifti-bin (tools shipped with the GIFTI library)
  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)
  • libgiftiio0 (IO library for the GIFTI cortical surface data format)
git-hub
  • git-hub (Git command line interface to GitHub)
glew
gmsl
  • gmsl (extra functions to extend functionality of GNU Makefiles)
google-glog
guacamole-client
  • guacamole (HTML5 web application for accessing remote desktops)
  • guacamole-tomcat (Tomcat-based Guacamole install with VNC support)
guacamole-server
haxby2001
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
impressive
  • impressive (PDF presentation tool with eye candies)
incf-nidash-oneclick
init-system-helpers
insighttoolkit4
ipython01x
ipython1x
ipython2x
isis
ismrmrd
itksnap
  • itksnap (semi-automatic segmentation of structures in 3D images)
jasp
  • jasp (Bayesian statistics made accessible)
jdcal
  • python-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
  • python3-jdcal (Julian dates from proleptic Gregorian and Julian calendars)
jist
  • jist (Java Image Science Toolkit)
joblib
  • python-joblib (tools to provide lightweight pipelining in Python)
klustakwik
  • klustakwik (automatic sorting of the samples (spikes) into clusters)
lazyarray
  • python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
lda
  • python-lda (Topic modeling with latent Dirichlet allocation for Python 3)
  • python3-lda (Topic modeling with latent Dirichlet allocation)
libcgroup
  • cgroup-bin (Tools to control and monitor control groups)
  • libcgroup-dev (Development libraries to develop applications that utilize control groups)
  • libcgroup1 (Library to control and monitor control groups)
  • libpam-cgroup (PAM module to move a user session into a cgroup)
libeatmydata
  • eatmydata (library and utilities designed to disable fsync and friends)
libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)
  • libgdf-dev (IO library for the GDF – development library)
  • libgdf0 (IO library for the GDF (general dataformat for biosignals))
  • libgdf0-dbg (IO library for the GDF – debug symbols)
  • matlab-gdf (IO library for the GDF – Matlab interface)
  • octave-gdf (IO library for the GDF – Octave interface)
libguac
  • libguac-dev (Development headers for the core Guacamole library)
  • libguac3 (Core Guacamole library used by guacd and client plugins)
libmialm
  • libmialm-dev (Development files for the MIA landmark library)
  • libmialm-doc (Documentation for the MIA landmark library)
  • libmialm3 (Landmark handling for the MIA tool chain)
  • libmialm3-dbg (Debug information for the MIA landmark library)
libpgm
libsvm
libusb-1.0
libvistaio
matlab-support
mclaren-rhesus-macaque-atlas
mcpanel
  • libmcpanel-dev (Library to display multichannel data in realtime (Developement files))
  • libmcpanel0 (Library to display multichannel data in realtime)
  • libmcpanel0-dbg (Library to display multichannel data in realtime (Debugging symbols))
mdp
  • python-mdp (Modular toolkit for Data Processing)
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)
mia
  • libmia-2.0-8 (library for 2D and 3D gray scale image processing)
  • libmia-2.0-8-dbg (Debug information for the MIA library)
  • libmia-2.0-dev (library for 2D and 3D gray scale image processing, development files)
  • libmia-2.0-doc (library for 2D and 3D gray scale image processing, documentation)
  • mia-tools (Command line tools for gray scale image processing)
  • mia-tools-dbg (Debugging information for the MIA command line tools)
  • mia-tools-doc (Cross-referenced documentation of the MIA command line tools)
mialmpick
  • mialmpick (Tools for landmark picking in 3D volume data sets)
  • mialmpick-dbg (Debug information landmark picking tool mialmpick)
mipav
  • mipav (quantitative analysis and visualization of medical images)
mlpy
mni-colin27
mni-icbm152-nlin
modules
mpi4py
mriconvert
  • mriconvert (medical image file conversion utility)
mricron
mridefacer
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)
  • mrtrix-doc (documentation for mrtrix)
msgpack-python
mwrap
  • mwrap (Octave/MATLAB mex generator)
ncdu
  • ncdu (ncurses disk usage viewer)
neo
  • python-neo (Python IO library for electrophysiological data formats)
netselect
  • netselect (speed tester for choosing a fast network server)
  • netselect-apt (speed tester for choosing a fast Debian mirror)
neurodebian
neurosynth
neurosynth-data
nibabel
nifti2dicom
nifticlib
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
nipy
nipy-suite
nipype
nitime
  • python-nitime (timeseries analysis for neuroscience data (nitime))
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
nlopt
  • libnlopt-dev (nonlinear optimization library – development package)
  • libnlopt-guile0 (nonlinear optimization library – Guile bindings)
  • libnlopt0 (nonlinear optimization library)
  • octave-nlopt (nonlinear optimization library – GNU Octave package)
  • python-nlopt (nonlinear optimization library – Python bindings)
nosexcover
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numdiff
  • numdiff (Compare similar files with numeric fields)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
numpydoc
odin
  • libodin-dev (static libraries and header for ODIN sequences)
  • mitools (view, convert and perform basic maths with medical image datasets)
  • odin (develop, simulate and run magnetic resonance sequences)
openmeeg
openopt
openpyxl
opensesame
  • opensesame (graphical experiment builder for the social sciences)
openstack-pkg-tools
openvibe
openwalnut
ordereddict
orthanc
p7zip
  • p7zip (7zr file archiver with high compression ratio)
  • p7zip-full (7z and 7za file archivers with high compression ratio)
pandas
parallelpython
  • python-pp (parallel and distributed programming toolkit for Python)
patool
  • patool (command line archive file manager)
patsy
pprocess
psignifit3
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pydicom
pyentropy
  • python-pyentropy (Python module for estimation information theoretic quantities)
pyepl
pygithub
pyglet
  • python-pyglet (cross-platform windowing and multimedia library)
pymc
  • python-pymc (Bayesian statistical models and fitting algorithms)
  • python-pymc-doc (Bayesian statistical models and fitting algorithms)
pymvpa
pymvpa2
pymvpa2-tutorialdata
pynifti
  • python-nifti (Python interface to the NIfTI I/O libraries)
pynn
  • python-pynn (simulator-independent specification of neuronal network models)
pyoptical
pysurfer
pytables
pytest
pytest-localserver
pytest-tornado
python-argcomplete
python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)
  • python3-docker (Python 3 wrapper to access docker.io’s control socket)
python-expyriment
python-funcsigs
python-future
  • python-future (single-source support for Python 3 and 2 - Python 2.x)
  • python-future-doc (Clean single-source support for Python 3 and 2 - doc)
  • python3-future (Clean single-source support for Python 3 and 2 - Python 3.x)
python-git
  • python-git (Python library to interact with Git repositories - Python 2.7)
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-humanize
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)
  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)
python-mne
  • python-mne (Python modules for MEG and EEG data analysis)
python-networkx
python-neuroshare
python-packaging
python-prov
python-psutil
  • python-psutil (module providing convenience functions for managing processes)
  • python3-psutil (module providing convenience functions for managing processes (Python3))
python-py
  • pypy-py (Advanced Python development support library (PyPy))
  • python-py (Advanced Python development support library (Python 2))
  • python3-py (Advanced Python development support library (Python 3))
python-pydotplus
python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)
  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))
  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))
  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))
  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))
python-pyld
python-pyo
  • python-pyo (Python module written in C to help digital signal processing script creation)
python-quantities
  • python-quantities (Library for computation of physical quantities with units, based on numpy)
python-scipy
python-scrapy
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)
  • python3-smmap (pure Python implementation of a sliding window memory map manager)
python-tornado
python-traits
  • python-traits4 (Manifest typing and reactive programming for Python)
python-tz
  • python-tz (Python version of the Olson timezone database)
  • python3-tz (Python3 version of the Olson timezone database)
python-urllib3
python-w3lib
  • python-w3lib (Collection of web-related functions for Python (Python 2))
  • python3-w3lib (Collection of web-related functions for Python (Python 3))
python-werkzeug
python3-dateutil
  • python3-dateutil (powerful extensions to the standard datetime module in Python 3)
pyxid
  • python-pyxid (interface for Cedrus XID and StimTracker devices)
pyxnat
  • python-pyxnat (Interface to access neuroimaging data on XNAT servers)
pyzmq
rdfind
  • rdfind (find duplicate files utility)
remake
  • remake (GNU make fork with improved error reporting and debugging)
requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)
  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)
  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)
rorden-mri-tutorial
rtfilter
scikit-learn
seaborn
setuptools-scm
shogun
sigviewer
  • sigviewer (GUI viewer for biosignals such as EEG, EMG, and ECG)
simplegeneric
singularity-container
six
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python-six-whl (Python 2 and 3 compatibility library (universal wheel))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
skimage
solar-eclipse
sphinx
  • python-sphinx (tool for producing documentation for Python projects)
sphinx-rtd-theme
spm8
spyder
spykeutils
spykeviewer
  • spykeviewer (graphical utility for analyzing electrophysiological data)
sri24-atlas
  • sri24-atlas (MRI-based brain atlas of normal adult human brain anatomy)
stabilitycalc
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
sympy
testkraut
  • testkraut (test and evaluate heterogeneous data processing pipelines)
tigervnc
tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)
  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)
ubuntu-keyring
underscore
utopia-documents
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))
  • python3-vcr (record and replay HTML interactions (Python3 library))
via
  • libvia-dev (library for volumetric image analysis)
  • libvia-doc (VIA library API documentation)
  • libvia2 (library for volumetric image analysis)
  • via-bin (tools for volumetric image analysis)
visionegg
vmri-nonfree
vowpal-wabbit
  • vowpal-wabbit (fast and scalable online machine learning algorithm)
voxbo
  • voxbo (processing, statistical analysis, and display of brain imaging data)
vrpn
  • libvrpn-dev (Virtual Reality Peripheral Network (development files))
  • libvrpn0 (Virtual Reality Peripheral Network (client library))
  • libvrpnserver0 (Virtual Reality Peripheral Network (server library))
  • vrpn (Virtual Reality Peripheral Network (executables))
  • vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))
vtk
  • libvtk-java (Visualization Toolkit - A high level 3D visualization library - java)
  • libvtk5-dev (VTK header files for building C++ code)
  • libvtk5-qt4-dev (Visualization Toolkit - A high level 3D visualization library - Qt devel)
  • libvtk5.8 (Visualization Toolkit - A high level 3D visualization library - runtime)
  • libvtk5.8-qt4 (Visualization Toolkit - A high level 3D visualization library - Qt runtime)
  • python-vtk (Python bindings for VTK)
  • tcl-vtk (Tcl bindings for VTK)
  • vtk-doc (VTK class reference documentation)
  • vtk-examples (C++, Tcl and Python example programs/scripts for VTK)
vtk-dicom
xdffileio
xmhtml
  • xmhtml1 (A Motif widget for display HTML 3.2)
  • xmhtml1-dev (A Motif widget for display HTML 3.2)
xppaut
  • xppaut (Phase Plane Plus Auto: Solves many kinds of equations)
zeromq
  • libzmq-dbg (ZeroMQ lightweight messaging kernel (debugging symbols))
  • libzmq-dev (ZeroMQ lightweight messaging kernel (development libraries and header files))
  • libzmq1 (ZeroMQ lightweight messaging kernel (shared library))

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