Packages made by Michael Hanke <mih@debian.org>

afni

• afni (toolkit for analyzing and visualizing functional MRI data)

• afni-common (miscellaneous scripts and data files for AFNI)

• afni-dbg (debug symbols for AFNI)

• afni-dev (header and static libraries for AFNI plugin development)

annexremote

• python3-annexremote (abstraction for git-annex special remote implementations)

caret

• caret (Computerized Anatomical Reconstruction and Editing Toolkit)

caret-data

• caret-data (common data files for Caret)

cctools

• coop-computing-tools (cooperative computing tools)

• coop-computing-tools-dev (libraries and header files for coop-computing-tools)

• coop-computing-tools-doc (documentation for coop-computing-tools)

• python-workqueue (cooperative computing tools work queue Python bindings)

condor

• htcondor (distributed workload management system)

• htcondor-dbg (distributed workload management system - debugging symbols)

• htcondor-dev (distributed workload management system - development files)

• htcondor-doc (distributed workload management system - documentation)

• libclassad-dev (HTCondor classads expression language - development library)

• libclassad8 (HTCondor classads expression language - runtime library)

datalad

• datalad (data files management and distribution platform)

• python3-datalad (data files management and distribution platform)

dcm2niix

• dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack

• python3-dcmstack (DICOM to NIfTI conversion - python3 package)

debruijn

• debruijn (De Bruijn cycle generator)

dicomnifti

• dicomnifti (converts DICOM files into the NIfTI format)

dipy

• python-dipy (Python library for the analysis of diffusion MRI datasets)

• python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)

• python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

eeglab11

• eeglab11-sampledata (sample EEG data for EEGLAB tutorials)

• matlab-eeglab11 (electrophysiological data analysis)

fsl

• fsl (transitional dummy package)

• fsl-5.0 (transitional dummy package)

• fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)

• fsl-core (metapackage for the latest version of FSL)

fsl-eddy-nonfree

• fsl-5.0-eddy-nonfree (correcting eddy currents and movements in diffusion data)

fsl-feeds

• fsl-feeds (FSL Evaluation and Example Data Suite)

fsldata

• fsl-5.0-doc-wiki (FSL documentation wiki)

• fsl-atlases (FSL’s MNI152 standard space stereotaxic brain atlases)

• fsl-bangor-cerebellar-atlas (probabilistic atlas of the human cerebellum)

• fsl-first-data (model data for FIRST subcortical brain segmentation)

• fsl-harvard-oxford-atlases (probabilistic atlas of human cortical brain areas (lateralized))

• fsl-harvard-oxford-cortical-lateralized-atlas (probabilistic atlas of human cortical and subcortical brain areas)

• fsl-jhu-dti-whitematter-atlas (human brain white-matter atlas)

• fsl-juelich-histological-atlas (brain atlas based on cyto- and myelo-architectonic segmentations)

• fsl-mni-structural-atlas (hand-segmented single-subject human brain atlas)

• fsl-mni152-templates (MNI152 stereotaxic brain templates for FSL)

• fsl-oxford-striatal-atlas (probabilistic atlas of the human brain’s sub-striatal regions)

• fsl-oxford-thalamic-connectivity-atlas (probabilistic brain atlas of thalamic white-matter connectivity)

• fsl-possum-data (sequence templates for the POSSUM MRI-simulator)

• fsl-resting-connectivity-parcellation-atlases (brain parcellations based on resting state connectivity)

• fsl-subthalamic-nucleus-atlas (probabilistic subthalamic nucleus atlas)

• fsl-talairach-daemon-atlas (structural anatomy labels of the Talairach atlas)

fsleyes

• fsleyes (FSL image viewer)

fsleyes-props

• python-fsleyes-props (Python descriptor framework)

fsleyes-widgets

• python-fsleyes-widgets (Python descriptor framework)

fslmeta

• fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))

• fsl-complete (metapackage for the entire FSL suite (tools and data))

fslpy

• python-fsl (FSL Python library)

• python3-fsl (FSL Python library)

fslview

• fslview (viewer for (f)MRI and DTI data)

• fslview-doc (Documentation for FSLView)

git-annex-adapter

• python3-git-annex-adapter (call git-annex commands from within Python)

git-annex-metadata-gui

• git-annex-metadata-gui (graphical interface to the metadata functionality of git-annex)

heudiconv

• heudiconv (DICOM converter with support for structure heuristics)

incf-nidash-oneclick

• incf-nidash-oneclick-clients (utility for pushing DICOM data to the INCF datasharing server)

indexed-gzip

• python-indexed-gzip (fast random access of gzip files in Python)

• python3-indexed-gzip (fast random access of gzip files in Python)

itksnap

• itksnap (semi-automatic segmentation of structures in 3D images)

jasp

• jasp (Bayesian statistics made accessible)

lazyarray

• python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)

matlab-support

• matlab-support (distro integration for local MATLAB installations)

• matlab-support-dev (helpers for packages building MATLAB toolboxes)

mclaren-rhesus-macaque-atlas

• mclaren-rhesus-macaque-atlas (MRI-based brain atlas of the rhesus macaque monkey)

mricron

• mricron (magnetic resonance image conversion, viewing and analysis)

• mricron-data (data files for MRIcron)

• mricron-doc (data files for MRIcron)

mridefacer

• mridefacer (de-identification of MRI data)

mrtrix

• mrtrix (diffusion-weighted MRI white matter tractography)

• mrtrix-doc (documentation for mrtrix)

mrtrix3

• mrtrix3 (diffusion-weighted MRI white matter tractography)

• mrtrix3-doc (documentation for mrtrix3)

neo

• python3-neo (Python IO library for electrophysiological data formats)

neurodebian

• neurodebian (neuroscience-oriented distribution - repository configuration)

• neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)

• neurodebian-desktop (neuroscience-oriented distribution - desktop integration)

• neurodebian-dev (neuroscience-oriented distribution - development tools)

• neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)

• neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)

neurosynth-data

• fsl-neurosynth-atlas (neurosynth - atlas for use with FSL, all 525 terms)

• fsl-neurosynth-top100-atlas (neurosynth - atlas for use with FSL, top 100 terms)

• neurosynth-dataset (neurosynth - dataset of extracted terms and activations)

nifticlib

• libnifti-dev (IO libraries for the NIfTI-1 data format)

• libnifti-doc (NIfTI library API documentation)

• libnifti2 (IO libraries for the NIfTI-1 data format)

• nifti-bin (tools shipped with the NIfTI library)

nilearn

• python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))

• python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))

nitime

• python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)

• python3-nitime (timeseries analysis for neuroscience data (nitime))

odin

• libodin-dev (static libraries and header for ODIN sequences)

• mitools (view, convert and perform basic maths with medical image datasets)

• odin (develop, simulate and run magnetic resonance sequences)

pprocess

• python-pprocess (elementary parallel programming for Python)

props

• python-props (Python descriptor framework)

psignifit3

• python-pypsignifit (psychometric analysis of psychophysics data in Python)

pydicom

• python-dicom (transitional package for python-pydicom)

• python-pydicom (DICOM medical file reading and writing (Python 2))

• python-pydicom-doc (DICOM medical file reading and writing (documentation))

• python3-dicom (transitional package for python3-pydicom)

• python3-pydicom (DICOM medical file reading and writing (Python 3))

pymvpa2

• python-mvpa2 (multivariate pattern analysis with Python v. 2)

• python-mvpa2-doc (documentation and examples for PyMVPA v. 2)

• python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)

pymvpa2-tutorialdata

• python-mvpa2-tutorialdata (data files for the PyMVPA tutorial)

pynifti

• python-nifti (Python interface to the NIfTI I/O libraries)

pynn

• python-pynn (simulator-independent specification of neuronal network models)

pysurfer

• python-surfer (visualize Freesurfer’s data in Python)

python-neuroshare

• python-neuroshare (Python interface and tools for Neuroshare)

• python-neuroshare-doc (Python interface and tools for Neuroshare)

python-quantities

• python3-quantities (Library for computation of physical quantities with units, based on numpy)

rorden-mri-tutorial

• rorden-mri-tutorial (Chris Rorden’s MRI analysis tutorial)

• rorden-mri-tutorial-data (data files for Chris Rorden’s MRI analysis tutorial)

spm8

• matlab-spm8 (analysis of brain imaging data sequences for Matlab)

• spm8-common (analysis of brain imaging data sequences)

• spm8-data (data files for SPM8)

• spm8-doc (manual for SPM8)

sri24-atlas

• sri24-atlas (MRI-based brain atlas of normal adult human brain anatomy)

stabilitycalc

• stabilitycalc (evaluate fMRI scanner stability)

testkraut

• testkraut (test and evaluate heterogeneous data processing pipelines)

via

• libvia-dev (library for volumetric image analysis)

• libvia-doc (VIA library API documentation)

• libvia2 (library for volumetric image analysis)

• via-bin (tools for volumetric image analysis)

vmri-nonfree

• virtual-mri-nonfree (Virtual Magnetic Resonance Imager)

voxbo

• voxbo (processing, statistical analysis, and display of brain imaging data)

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