Packages made by Michael Hanke <mih@debian.org>¶
- afni
- afni (toolkit for analyzing and visualizing functional MRI data)
- afni-common (miscellaneous scripts and data files for AFNI)
- afni-dbg (debug symbols for AFNI)
- afni-dev (header and static libraries for AFNI plugin development)
- annexremote
- python3-annexremote (abstraction for git-annex special remote implementations)
- caret
- caret (Computerized Anatomical Reconstruction and Editing Toolkit)
- caret-data
- caret-data (common data files for Caret)
- cctools
- coop-computing-tools (cooperative computing tools)
- coop-computing-tools-dev (libraries and header files for coop-computing-tools)
- coop-computing-tools-doc (documentation for coop-computing-tools)
- python-workqueue (cooperative computing tools work queue Python bindings)
- condor
- htcondor (distributed workload management system)
- htcondor-dbg (distributed workload management system - debugging symbols)
- htcondor-dev (distributed workload management system - development files)
- htcondor-doc (distributed workload management system - documentation)
- libclassad-dev (HTCondor classads expression language - development library)
- libclassad8 (HTCondor classads expression language - runtime library)
- datalad
- datalad (data files management and distribution platform)
- python3-datalad (data files management and distribution platform)
- dcm2niix
- dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
- dcmstack
- python3-dcmstack (DICOM to NIfTI conversion - python3 package)
- debruijn
- debruijn (De Bruijn cycle generator)
- dicomnifti
- dicomnifti (converts DICOM files into the NIfTI format)
- dipy
- python-dipy (Python library for the analysis of diffusion MRI datasets)
- python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
- python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
- eeglab11
- eeglab11-sampledata (sample EEG data for EEGLAB tutorials)
- matlab-eeglab11 (electrophysiological data analysis)
- fsl
- fsl (transitional dummy package)
- fsl-5.0 (transitional dummy package)
- fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
- fsl-core (metapackage for the latest version of FSL)
- fsl-eddy-nonfree
- fsl-5.0-eddy-nonfree (correcting eddy currents and movements in diffusion data)
- fsl-feeds
- fsl-feeds (FSL Evaluation and Example Data Suite)
- fsldata
- fsl-5.0-doc-wiki (FSL documentation wiki)
- fsl-atlases (FSL’s MNI152 standard space stereotaxic brain atlases)
- fsl-bangor-cerebellar-atlas (probabilistic atlas of the human cerebellum)
- fsl-first-data (model data for FIRST subcortical brain segmentation)
- fsl-harvard-oxford-atlases (probabilistic atlas of human cortical brain areas (lateralized))
- fsl-harvard-oxford-cortical-lateralized-atlas (probabilistic atlas of human cortical and subcortical brain areas)
- fsl-jhu-dti-whitematter-atlas (human brain white-matter atlas)
- fsl-juelich-histological-atlas (brain atlas based on cyto- and myelo-architectonic segmentations)
- fsl-mni-structural-atlas (hand-segmented single-subject human brain atlas)
- fsl-mni152-templates (MNI152 stereotaxic brain templates for FSL)
- fsl-oxford-striatal-atlas (probabilistic atlas of the human brain’s sub-striatal regions)
- fsl-oxford-thalamic-connectivity-atlas (probabilistic brain atlas of thalamic white-matter connectivity)
- fsl-possum-data (sequence templates for the POSSUM MRI-simulator)
- fsl-resting-connectivity-parcellation-atlases (brain parcellations based on resting state connectivity)
- fsl-subthalamic-nucleus-atlas (probabilistic subthalamic nucleus atlas)
- fsl-talairach-daemon-atlas (structural anatomy labels of the Talairach atlas)
- fsleyes
- fsleyes (FSL image viewer)
- fsleyes-props
- python-fsleyes-props (Python descriptor framework)
- fsleyes-widgets
- python-fsleyes-widgets (Python descriptor framework)
- fslmeta
- fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
- fsl-complete (metapackage for the entire FSL suite (tools and data))
- fslpy
- python-fsl (FSL Python library)
- python3-fsl (FSL Python library)
- fslview
- fslview (viewer for (f)MRI and DTI data)
- fslview-doc (Documentation for FSLView)
- git-annex-adapter
- python3-git-annex-adapter (call git-annex commands from within Python)
- git-annex-metadata-gui
- git-annex-metadata-gui (graphical interface to the metadata functionality of git-annex)
- heudiconv
- heudiconv (DICOM converter with support for structure heuristics)
- incf-nidash-oneclick
- incf-nidash-oneclick-clients (utility for pushing DICOM data to the INCF datasharing server)
- indexed-gzip
- python-indexed-gzip (fast random access of gzip files in Python)
- python3-indexed-gzip (fast random access of gzip files in Python)
- itksnap
- itksnap (semi-automatic segmentation of structures in 3D images)
- jasp
- jasp (Bayesian statistics made accessible)
- lazyarray
- python-lazyarray (Python module providing a NumPy-compatible lazily-evaluated array)
- matlab-support
- matlab-support (distro integration for local MATLAB installations)
- matlab-support-dev (helpers for packages building MATLAB toolboxes)
- mclaren-rhesus-macaque-atlas
- mclaren-rhesus-macaque-atlas (MRI-based brain atlas of the rhesus macaque monkey)
- mricron
- mricron (magnetic resonance image conversion, viewing and analysis)
- mricron-data (data files for MRIcron)
- mricron-doc (data files for MRIcron)
- mridefacer
- mridefacer (de-identification of MRI data)
- mrtrix
- mrtrix (diffusion-weighted MRI white matter tractography)
- mrtrix-doc (documentation for mrtrix)
- mrtrix3
- mrtrix3 (diffusion-weighted MRI white matter tractography)
- mrtrix3-doc (documentation for mrtrix3)
- neo
- python3-neo (Python IO library for electrophysiological data formats)
- neurodebian
- neurodebian (neuroscience-oriented distribution - repository configuration)
- neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)
- neurodebian-desktop (neuroscience-oriented distribution - desktop integration)
- neurodebian-dev (neuroscience-oriented distribution - development tools)
- neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)
- neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)
- neurosynth-data
- fsl-neurosynth-atlas (neurosynth - atlas for use with FSL, all 525 terms)
- fsl-neurosynth-top100-atlas (neurosynth - atlas for use with FSL, top 100 terms)
- neurosynth-dataset (neurosynth - dataset of extracted terms and activations)
- nifticlib
- libnifti-dev (IO libraries for the NIfTI-1 data format)
- libnifti-doc (NIfTI library API documentation)
- libnifti2 (IO libraries for the NIfTI-1 data format)
- nifti-bin (tools shipped with the NIfTI library)
- nilearn
- python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))
- python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))
- nitime
- python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
- python3-nitime (timeseries analysis for neuroscience data (nitime))
- odin
- libodin-dev (static libraries and header for ODIN sequences)
- mitools (view, convert and perform basic maths with medical image datasets)
- odin (develop, simulate and run magnetic resonance sequences)
- pprocess
- python-pprocess (elementary parallel programming for Python)
- props
- python-props (Python descriptor framework)
- psignifit3
- python-pypsignifit (psychometric analysis of psychophysics data in Python)
- pydicom
- python-dicom (transitional package for python-pydicom)
- python-pydicom (DICOM medical file reading and writing (Python 2))
- python-pydicom-doc (DICOM medical file reading and writing (documentation))
- python3-dicom (transitional package for python3-pydicom)
- python3-pydicom (DICOM medical file reading and writing (Python 3))
- pymvpa2
- python-mvpa2 (multivariate pattern analysis with Python v. 2)
- python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
- python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
- pymvpa2-tutorialdata
- python-mvpa2-tutorialdata (data files for the PyMVPA tutorial)
- pynifti
- python-nifti (Python interface to the NIfTI I/O libraries)
- pynn
- python-pynn (simulator-independent specification of neuronal network models)
- pysurfer
- python-surfer (visualize Freesurfer’s data in Python)
- python-neuroshare
- python-neuroshare (Python interface and tools for Neuroshare)
- python-neuroshare-doc (Python interface and tools for Neuroshare)
- python-quantities
- python3-quantities (Library for computation of physical quantities with units, based on numpy)
- rorden-mri-tutorial
- rorden-mri-tutorial (Chris Rorden’s MRI analysis tutorial)
- rorden-mri-tutorial-data (data files for Chris Rorden’s MRI analysis tutorial)
- spm8
- matlab-spm8 (analysis of brain imaging data sequences for Matlab)
- spm8-common (analysis of brain imaging data sequences)
- spm8-data (data files for SPM8)
- spm8-doc (manual for SPM8)
- sri24-atlas
- sri24-atlas (MRI-based brain atlas of normal adult human brain anatomy)
- stabilitycalc
- stabilitycalc (evaluate fMRI scanner stability)
- testkraut
- testkraut (test and evaluate heterogeneous data processing pipelines)
- via
- libvia-dev (library for volumetric image analysis)
- libvia-doc (VIA library API documentation)
- libvia2 (library for volumetric image analysis)
- via-bin (tools for volumetric image analysis)
- vmri-nonfree
- virtual-mri-nonfree (Virtual Magnetic Resonance Imager)
- voxbo
- voxbo (processing, statistical analysis, and display of brain imaging data)