Packages for Debian GNU/Linux 11.0 (bullseye)

annexremote

• python3-annexremote (abstraction for git-annex special remote implementations)

bats

• bats (bash automated testing system)

btrbk

• btrbk (backup tool for btrfs subvolumes)

connectome-workbench

• connectome-workbench (brain visualization, analysis and discovery tool)
• connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)

datalad

• datalad (data files management and distribution platform)
• python3-datalad (data files management and distribution platform)

datalad-container

• datalad-container (DataLad extension for working with containerized environments)

dcm2niix

• dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack

• python3-dcmstack (DICOM to NIfTI conversion - python3 package)

debhelper

• debhelper (helper programs for debian/rules)
• dh-systemd (debhelper add-on to handle systemd unit files - transitional package)

diskcache

• python3-diskcache (Python module for Disk and file backed persistent cache)

duecredit

• python3-duecredit (Publications (and donations) tracer)

edac-utils

• edac-utils (report kernel-detected PCI and ECC RAM errors)
• libedac-dev (report kernel-detected PCI and ECC RAM errors)
• libedac1 (report kernel-detected PCI and ECC RAM errors)
• libedac1-dbg (report kernel-detected PCI and ECC RAM errors)

exempi

• exempi (command line tool to manipulate XMP metadata)
• libexempi-dev (library to parse XMP metadata (Development files))
• libexempi3 (library to parse XMP metadata (Library))

git

• git (fast, scalable, distributed revision control system)
• git-all (fast, scalable, distributed revision control system (all subpackages))
• git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
• git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
• git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
• git-doc (fast, scalable, distributed revision control system (documentation))
• git-el (fast, scalable, distributed revision control system (emacs support))
• git-email (fast, scalable, distributed revision control system (email add-on))
• git-gui (fast, scalable, distributed revision control system (GUI))
• git-man (fast, scalable, distributed revision control system (manual pages))
• git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
• git-svn (fast, scalable, distributed revision control system (svn interoperability))
• gitk (fast, scalable, distributed revision control system (revision tree visualizer))
• gitweb (fast, scalable, distributed revision control system (web interface))

git-annex

• git-annex-standalone (manage files with git, without checking their contents into git – standalone build)

git-annex-remote-rclone

• git-annex-remote-rclone (rclone-based git annex special remote)

glm

• libglm-dev (C++ library for OpenGL GLSL type-based mathematics)
• libglm-doc (documentation for the OpenGL Mathematics (GLM) library)

haskell-filepath-bytestring

• libghc-filepath-bytestring-dev (library for manipulating RawFilePaths)
• libghc-filepath-bytestring-doc (library for manipulating RawFilePaths; documentation)
• libghc-filepath-bytestring-prof (library for manipulating RawFilePaths; profiling libraries)

hdmf

• python3-hdmf (Hierarchical Data Modeling Framework)

heudiconv

• heudiconv (DICOM converter with support for structure heuristics)

impressive

• impressive (PDF presentation tool with eye candies)

libgdf

• gdf-tools (IO library for the GDF – helper tools)
• libgdf-dev (IO library for the GDF – development library)
• libgdf0 (IO library for the GDF (general dataformat for biosignals))
• matlab-gdf (IO library for the GDF – Matlab interface)
• octave-gdf (IO library for the GDF – Octave interface)

libqtpas

• libqt5pas-dev (Development files for Qt5Pas)
• libqt5pas1 (Qt5 interface bindings for Pascal)

mrtrix3

• mrtrix3 (diffusion-weighted MRI white matter tractography)
• mrtrix3-doc (documentation for mrtrix3)

ncdu

• ncdu (ncurses disk usage viewer)

neo

• python3-neo (Python IO library for electrophysiological data formats)

neurodebian

• neurodebian (neuroscience-oriented distribution - repository configuration)
• neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)
• neurodebian-desktop (neuroscience-oriented distribution - desktop integration)
• neurodebian-dev (neuroscience-oriented distribution - development tools)
• neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)
• neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)

nibabel

• python-nibabel-doc (documentation for NiBabel)
• python3-nibabel (Python3 bindings to various neuroimaging data formats)

nipy

• python-nipy-doc (documentation and examples for NiPy)
• python3-nipy (Analysis of structural and functional neuroimaging data)
• python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
• python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipype

• python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
• python3-nipype (Neuroimaging data analysis pipelines in Python3)

nitime

• python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
• python3-nitime (timeseries analysis for neuroscience data (nitime))

nuitka

• nuitka (Python compiler with full language support and CPython compatibility)

openstack-pkg-tools

• openstack-pkg-tools (Tools and scripts for building Openstack packages in Debian)

platformdirs

• python3-platformdirs (determining appropriate platform-specific directories (Python 3))

psychopy

• psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3

• octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
• psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
• psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
• psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)

psychtoolbox-3-nonfree

• matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
• matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
• octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)

pycharm-community-sloppy

• pycharm-community-sloppy (PyCharm IDE (sloppy packaging))

pygithub

• python3-github (Access the full Github API v3 from Python3)

pyglet

• python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pynwb

• python3-pynwb (Python library for working with Neurodata in the NWB format)

pyrsistent

• python3-pyrsistent (persistent/functional/immutable data structures for Python)

pytest-mock

• python3-pytest-mock (thin-wrapper around mock for easier use with py.test (Python 3 module))

python-argcomplete

• python3-argcomplete (bash tab completion for argparse (for Python 3))

python-distro

• python3-distro (Linux OS platform information API)

python-etelemetry

• python3-etelemetry (lightweight Python3 client to communicate with the etelemetry server)

python-fasteners

• python3-fasteners (provides useful locks - Python 3.x)

python-filelock

• python-filelock (platform independent file locking module (Python 2))
• python3-filelock (platform independent file locking module (Python 3))

python-git

• python-git-doc (Python library to interact with Git repositories - docs)
• python3-git (Python library to interact with Git repositories - Python 3.x)

python-httpretty

• python3-httpretty (HTTP client mock - Python 3.x)

python-importlib-metadata

• python3-importlib-metadata (library to access the metadata for a Python package - Python 3.x)

python-jsonschema

• python-jsonschema-doc (An(other) implementation of JSON Schema (Draft 3 and 4) - doc)
• python3-jsonschema (An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x)

python-pyfakefs

• python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)

python-quantities

• python3-quantities (Library for computation of physical quantities with units, based on numpy)

python-questplus

• python3-questplus (QUEST+ implementation in Python3)

python-sphinxcontrib.apidoc

• python3-sphinxcontrib.apidoc (Sphinx extension for running ‘sphinx-apidoc’ on each build - Python 3.x)

python-zipp

• python3-zipp (pathlib-compatible Zipfile object wrapper - Python 3.x)

pyxid

• python3-pyxid (interface for Cedrus XID and StimTracker devices)

rnc2rng

• python3-rnc2rng (RELAX NG Compact to regular syntax conversion library)

s3cmd

• s3cmd (command-line Amazon S3 client)

singularity-container

• singularity-container (container platform focused on supporting “Mobility of Compute”)

svgtune

• svgtune (tool to generate a set of .svg files out of a single .svg file)

youtube-dl

• youtube-dl (downloader of videos from YouTube and other sites)

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