Packages for Debian GNU/Linux 10.0 (buster)¶
- afni
- afni (toolkit for analyzing and visualizing functional MRI data)
- afni-common (miscellaneous scripts and data files for AFNI)
- afni-dbg (debug symbols for AFNI)
- afni-dev (header and static libraries for AFNI plugin development)
- afni-data
- afni-atlases (standard space brain atlases for AFNI)
- annexremote
- python3-annexremote (abstraction for git-annex special remote implementations)
- asciidoctor
- asciidoctor (AsciiDoc to HTML rendering for Ruby)
- asciidoctor-doc (AsciiDoc to HTML rendering for Ruby (documentation))
- ruby-asciidoctor (AsciiDoc to HTML rendering for Ruby (core libraries))
- bats
- bats (bash automated testing system)
- btrbk
- btrbk (backup tool for btrfs subvolumes)
- chardet
- python-chardet (universal character encoding detector for Python2)
- python3-chardet (universal character encoding detector for Python3)
- condor
- htcondor (distributed workload management system)
- htcondor-dbg (distributed workload management system - debugging symbols)
- htcondor-dev (distributed workload management system - development files)
- htcondor-doc (distributed workload management system - documentation)
- libclassad-dev (HTCondor classads expression language - development library)
- libclassad8 (HTCondor classads expression language - runtime library)
- connectome-workbench
- connectome-workbench (brain visualization, analysis and discovery tool)
- connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)
- convert3d
- convert3d (tool(s) for converting 3D images between common file formats)
- copyq
- copyq (Advanced clipboard manager with editing and scripting features)
- copyq-doc (Documentation and examples for CopyQ - HTML format)
- copyq-plugins (Plugins for CopyQ)
- datalad
- datalad (data files management and distribution platform)
- python3-datalad (data files management and distribution platform)
- datalad-container
- datalad-container (DataLad extension for working with containerized environments)
- dcm2niix
- dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
- dcmstack
- python3-dcmstack (DICOM to NIfTI conversion - python3 package)
- debhelper
- debhelper (helper programs for debian/rules)
- libdebhelper-perl (debhelper perl modules)
- dh-octave
- dh-octave (Debhelper-based infrastructure for building Octave add-on packages)
- dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)
- dipy
- python-dipy (Python library for the analysis of diffusion MRI datasets)
- python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
- python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
- diskcache
- python3-diskcache (Python module for Disk and file backed persistent cache)
- dmtcp
- duecredit
- python3-duecredit (Publications (and donations) tracer)
- dwz
- dwz (DWARF compression tool)
- edac-utils
- edac-utils (report kernel-detected PCI and ECC RAM errors)
- libedac-dev (report kernel-detected PCI and ECC RAM errors)
- libedac1 (report kernel-detected PCI and ECC RAM errors)
- libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
- exempi
- exempi (command line tool to manipulate XMP metadata)
- libexempi-dev (library to parse XMP metadata (Development files))
- libexempi3 (library to parse XMP metadata (Library))
- fsl
- fsl (transitional dummy package)
- fsl-5.0 (transitional dummy package)
- fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
- fsl-core (metapackage for the latest version of FSL)
- fsleyes
- fsleyes (FSL image viewer)
- fsleyes-props
- python-fsleyes-props (Python descriptor framework)
- fsleyes-widgets
- python-fsleyes-widgets (Python descriptor framework)
- fslmeta
- fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
- fsl-complete (metapackage for the entire FSL suite (tools and data))
- fslpy
- python-fsl (FSL Python library)
- python3-fsl (FSL Python library)
- gifticlib
- gifti-bin (tools shipped with the GIFTI library)
- libgiftiio-dev (IO library for the GIFTI cortical surface data format)
- libgiftiio0 (IO library for the GIFTI cortical surface data format)
- git
- git (fast, scalable, distributed revision control system)
- git-all (fast, scalable, distributed revision control system (all subpackages))
- git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
- git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
- git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
- git-doc (fast, scalable, distributed revision control system (documentation))
- git-el (fast, scalable, distributed revision control system (emacs support))
- git-email (fast, scalable, distributed revision control system (email add-on))
- git-gui (fast, scalable, distributed revision control system (GUI))
- git-man (fast, scalable, distributed revision control system (manual pages))
- git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
- git-svn (fast, scalable, distributed revision control system (svn interoperability))
- gitk (fast, scalable, distributed revision control system (revision tree visualizer))
- gitweb (fast, scalable, distributed revision control system (web interface))
- git-annex
- git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
- git-annex-remote-rclone
- git-annex-remote-rclone (rclone-based git annex special remote)
- glm
- libglm-dev (C++ library for OpenGL GLSL type-based mathematics)
- libglm-doc (documentation for the OpenGL Mathematics (GLM) library)
- h5py
- python-h5py (general-purpose Python interface to hdf5 (Python 2))
- python-h5py-dbg (debug extensions for h5py (Python 2))
- python-h5py-doc (documentation for h5py)
- python3-h5py (general-purpose Python interface to hdf5 (Python 3))
- python3-h5py-dbg (debug extensions for h5py (Python 3))
- haskell-filepath-bytestring
- libghc-filepath-bytestring-dev (library for manipulating RawFilePaths)
- libghc-filepath-bytestring-doc (library for manipulating RawFilePaths; documentation)
- libghc-filepath-bytestring-prof (library for manipulating RawFilePaths; profiling libraries)
- hdmf
- python3-hdmf (Hierarchical Data Modeling Framework)
- heudiconv
- heudiconv (DICOM converter with support for structure heuristics)
- importlib-resources
- python3-importlib-resources (Read resources from Python packages)
- impressive
- impressive (PDF presentation tool with eye candies)
- indexed-gzip
- python-indexed-gzip (fast random access of gzip files in Python)
- python3-indexed-gzip (fast random access of gzip files in Python)
- joblib
- python-joblib (tools to provide lightweight pipelining in Python)
- python3-joblib (tools to provide lightweight pipelining in Python)
- json-tricks
- pypy-json-tricks (Python module with extra features for JSON files)
- python-json-tricks (Python module with extra features for JSON files)
- python3-json-tricks (Python module with extra features for JSON files)
- libfreenect
- freenect (library for accessing Kinect device – metapackage)
- libfreenect-bin (library for accessing Kinect device – utilities and samples)
- libfreenect-demos (library for accessing Kinect device – dummy package)
- libfreenect-dev (library for accessing Kinect device – development files)
- libfreenect-doc (library for accessing Kinect device – documentation)
- libfreenect0.5 (library for accessing Kinect device)
- libgdf
- gdf-tools (IO library for the GDF – helper tools)
- libgdf-dev (IO library for the GDF – development library)
- libgdf0 (IO library for the GDF (general dataformat for biosignals))
- matlab-gdf (IO library for the GDF – Matlab interface)
- octave-gdf (IO library for the GDF – Octave interface)
- libqtpas
- libqt5pas-dev (Development files for Qt5Pas)
- libqt5pas1 (Qt5 interface bindings for Pascal)
- mrtrix
- mrtrix (diffusion-weighted MRI white matter tractography)
- mrtrix-doc (documentation for mrtrix)
- mrtrix3
- mrtrix3 (diffusion-weighted MRI white matter tractography)
- mrtrix3-doc (documentation for mrtrix3)
- msgpack-python
- python-msgpack (Python implementation of MessagePack format)
- python3-msgpack (Python 3 implementation of MessagePack format)
- mutagen
- python-mutagen (audio metadata editing library)
- python-mutagen-doc (audio metadata editing library - documentation)
- python3-mutagen (audio metadata editing library (Python 3))
- ncdu
- ncdu (ncurses disk usage viewer)
- neo
- python3-neo (Python IO library for electrophysiological data formats)
- neurodebian
- neurodebian (neuroscience-oriented distribution - repository configuration)
- neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)
- neurodebian-desktop (neuroscience-oriented distribution - desktop integration)
- neurodebian-dev (neuroscience-oriented distribution - development tools)
- neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)
- neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)
- nibabel
- python-nibabel-doc (documentation for NiBabel)
- python3-nibabel (Python3 bindings to various neuroimaging data formats)
- nipy
- python-nipy-doc (documentation and examples for NiPy)
- python3-nipy (Analysis of structural and functional neuroimaging data)
- python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
- python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))
- nipype
- python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
- python3-nipype (Neuroimaging data analysis pipelines in Python3)
- nitime
- python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
- python3-nitime (timeseries analysis for neuroscience data (nitime))
- nuitka
- nuitka (Python compiler with full language support and CPython compatibility)
- numexpr
- python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
- python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
- openpyxl
- python-openpyxl (Python module to read/write OpenXML xlsx/xlsm files)
- python3-openpyxl (Python 3 module to read/write OpenXML xlsx/xlsm files)
- openstack-pkg-tools
- openstack-pkg-tools (Tools and scripts for building Openstack packages in Debian)
- openxr-sdk-source
- libopenxr-dev (OpenXR software development kit – development headers)
- libopenxr-loader1 (OpenXR loader library)
- libopenxr-utils (OpenXR software development kit – utilities)
- openxr-layer-apidump (OpenXR software development kit – API dump layer)
- openxr-layer-corevalidation (OpenXR software development kit – validation layer)
- pandas
- python-pandas (data structures for “relational” or “labeled” data)
- python-pandas-doc (documentation and examples for pandas)
- python-pandas-lib (low-level implementations and bindings for pandas)
- python3-pandas (data structures for “relational” or “labeled” data - Python 3)
- python3-pandas-lib (low-level implementations and bindings for pandas - Python 3)
- patool
- patool (command line archive file manager)
- patsy
- python-patsy (statistical models in Python using symbolic formulas)
- python-patsy-doc (documentation and examples for patsy)
- python3-patsy (statistical models in Python using symbolic formulas)
- pprocess
- python-pprocess (elementary parallel programming for Python)
- psychopy
- psychopy (environment for creating psychology stimuli in Python)
- psychtoolbox-3
- octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
- psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
- psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
- psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)
- psychtoolbox-3-nonfree
- matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
- matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
- octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)
- pycharm-community-sloppy
- pycharm-community-sloppy (PyCharm IDE (sloppy packaging))
- pydicom
- python-dicom (transitional package for python-pydicom)
- python-pydicom (DICOM medical file reading and writing (Python 2))
- python-pydicom-doc (DICOM medical file reading and writing (documentation))
- python3-dicom (transitional package for python3-pydicom)
- python3-pydicom (DICOM medical file reading and writing (Python 3))
- pydot
- python-pydot (Python interface to Graphviz’s dot)
- python3-pydot (Python interface to Graphviz’s dot (Python 3))
- pygithub
- python3-github (Access the full Github API v3 from Python3)
- pyglet
- python3-pyglet (cross-platform windowing and multimedia library (Python 3))
- pymvpa2
- python-mvpa2 (multivariate pattern analysis with Python v. 2)
- python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
- python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)
- pynwb
- python3-pynwb (Python library for working with Neurodata in the NWB format)
- pyrsistent
- python3-pyrsistent (persistent/functional/immutable data structures for Python)
- python-argcomplete
- python3-argcomplete (bash tab completion for argparse (for Python 3))
- python-babel
- python-babel (tools for internationalizing Python applications - Python 2.x)
- python-babel-doc (tools for internationalizing Python applications - documentation)
- python-babel-localedata (tools for internationalizing Python applications - locale data files)
- python3-babel (tools for internationalizing Python applications - Python 3.x)
- python-boto
- python-boto (Python interface to Amazon’s Web Services - Python 2.x)
- python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
- python-bz2file
- python-bz2file (Python library for reading and writing bzip2-compressed files)
- python3-bz2file (Python3 library for reading and writing bzip2-compressed files)
- python-deprecation
- python-deprecation (Library to handle automated deprecations - Python 2.x)
- python3-deprecation (Library to handle automated deprecations - Python 3.x)
- python-distro
- python3-distro (Linux OS platform information API)
- python-etelemetry
- python3-etelemetry (lightweight Python3 client to communicate with the etelemetry server)
- python-exif
- python-exif (Python library to extract Exif data from TIFF and JPEG files)
- python3-exif (Python library to extract Exif data from TIFF and JPEG files)
- python-fasteners
- python3-fasteners (provides useful locks - Python 3.x)
- python-filelock
- python-filelock (platform independent file locking module (Python 2))
- python3-filelock (platform independent file locking module (Python 3))
- python-git
- python-git-doc (Python library to interact with Git repositories - docs)
- python3-git (Python library to interact with Git repositories - Python 3.x)
- python-gitdb
- python-gitdb (pure-Python git object database (Python 2))
- python3-gitdb (pure-Python git object database (Python 3))
- python-httpretty
- python3-httpretty (HTTP client mock - Python 3.x)
- python-hypothesis
- pypy-hypothesis (advanced Quickcheck style testing library for PyPy)
- python-hypothesis (advanced Quickcheck style testing library for Python 2)
- python-hypothesis-doc (advanced Quickcheck style testing library (documentation))
- python3-hypothesis (advanced Quickcheck style testing library for Python 3)
- python-importlib-metadata
- python3-importlib-metadata (library to access the metadata for a Python package - Python 3.x)
- python-jsonschema
- python-jsonschema-doc (An(other) implementation of JSON Schema (Draft 3 and 4) - doc)
- python3-jsonschema (An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x)
- python-monotonic
- python-monotonic (implementation of time.monotonic() - Python 2.x)
- python3-monotonic (implementation of time.monotonic() - Python 3.x)
- python-pyfakefs
- python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)
- python-pyperclip
- python-pyperclip (Cross-platform clipboard module for Python)
- python3-pyperclip (Cross-platform clipboard module for Python3)
- python-quantities
- python3-quantities (Library for computation of physical quantities with units, based on numpy)
- python-rpaths
- python-rpaths-doc (documentation for rpaths)
- python3-rpaths (cross-platform path manipulation library for Python)
- python-sphinxcontrib.apidoc
- python3-sphinxcontrib.apidoc (Sphinx extension for running ‘sphinx-apidoc’ on each build - Python 3.x)
- python-typing-extensions
- python3-typing-extensions (Backported and Experimental Type Hints for Python)
- python-whoosh
- python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
- python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
- python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
- python-wrapt
- python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
- python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
- python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
- python-xmp-toolkit
- python3-libxmp (Python3 library for XMP metadata)
- python3-libxmp-doc (Python library for XMP metadata - documentation)
- python-zipp
- python3-zipp (pathlib-compatible Zipfile object wrapper - Python 3.x)
- pyxid
- python3-pyxid (interface for Cedrus XID and StimTracker devices)
- rclone
- golang-github-ncw-rclone-dev (go source code of rclone)
- rclone (rsync for commercial cloud storage)
- remake
- remake (GNU make fork with improved error reporting and debugging)
- reprozip
- python3-reprozip (modules for the ReproZip packer)
- python3-reprozip-dbg (debug extensions for the ReproZip packer)
- reprozip (tool for reproducing scientific experiments (packer))
- s3cmd
- s3cmd (command-line Amazon S3 client)
- scikit-learn
- python-sklearn (Python modules for machine learning and data mining)
- python-sklearn-doc (documentation and examples for scikit-learn)
- python-sklearn-lib (low-level implementations and bindings for scikit-learn)
- python3-sklearn (Python modules for machine learning and data mining - Python 3)
- python3-sklearn-lib (low-level implementations and bindings for scikit-learn - Python 3)
- setuptools-scm
- python-setuptools-scm (blessed package to manage your versions by scm tags for Python 2)
- python3-setuptools-scm (blessed package to manage your versions by scm tags for Python 3)
- singularity-container
- singularity-container (container platform focused on supporting “Mobility of Compute”)
- six
- pypy-six (Python 2 and 3 compatibility library (PyPy interface))
- python-six (Python 2 and 3 compatibility library (Python 2 interface))
- python3-six (Python 2 and 3 compatibility library (Python 3 interface))
- skimage
- python-skimage (Python modules for image processing)
- python-skimage-doc (Documentation and examples for scikit-image)
- python-skimage-lib (Optimized low-level algorithms for scikit-image)
- python3-skimage (Python 3 modules for image processing)
- python3-skimage-lib (Optimized low-level algorithms for Python 3 scikit-image)
- sphinx-gallery
- python-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts)
- python-sphinx-gallery-doc (extension that builds an HTML gallery of examples from Python scripts (Doc))
- python3-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts (Python 3))
- statsmodels
- python-statsmodels (Python module for the estimation of statistical models)
- python-statsmodels-doc (documentation and examples for statsmodels)
- python-statsmodels-lib (low-level implementations and bindings for statsmodels)
- python3-statsmodels (Python3 module for the estimation of statistical models)
- python3-statsmodels-lib (Python3 low-level implementations and bindings for statsmodels)
- stimfit
- python-stfio (Python module to read common electrophysiology file formats.)
- stimfit (Program for viewing and analyzing electrophysiological data)
- stimfit-dbg (Debug symbols for stimfit)
- svgtune
- svgtune (tool to generate a set of .svg files out of a single .svg file)
- sympy
- isympy-common (Python shell for SymPy)
- isympy3 (Python3 shell for SymPy)
- python-sympy (Computer Algebra System (CAS) in Python)
- python-sympy-doc (Computer Algebra System (CAS) in Python - Documentation)
- python3-sympy (Computer Algebra System (CAS) in Python (Python3))
- vowpal-wabbit
- libvw-dev (fast and scalable online machine learning algorithm - development files)
- libvw0 (fast and scalable online machine learning algorithm - dynamic library)
- vowpal-wabbit (fast and scalable online machine learning algorithm)
- vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
- vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
- xlwt
- python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
- python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
- python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)
- youtube-dl
- youtube-dl (downloader of videos from YouTube and other sites)