Packages for Debian GNU/Linux 10.0 (buster)¶

afni

afni (toolkit for analyzing and visualizing functional MRI data)
afni-common (miscellaneous scripts and data files for AFNI)
afni-dbg (debug symbols for AFNI)
afni-dev (header and static libraries for AFNI plugin development)

afni-data

afni-atlases (standard space brain atlases for AFNI)

annexremote

python3-annexremote (abstraction for git-annex special remote implementations)

asciidoctor

asciidoctor (AsciiDoc to HTML rendering for Ruby)
asciidoctor-doc (AsciiDoc to HTML rendering for Ruby (documentation))
ruby-asciidoctor (AsciiDoc to HTML rendering for Ruby (core libraries))

bats

bats (bash automated testing system)

btrbk

btrbk (backup tool for btrfs subvolumes)

chardet

python-chardet (universal character encoding detector for Python2)
python3-chardet (universal character encoding detector for Python3)

condor

htcondor (distributed workload management system)
htcondor-dbg (distributed workload management system - debugging symbols)
htcondor-dev (distributed workload management system - development files)
htcondor-doc (distributed workload management system - documentation)
libclassad-dev (HTCondor classads expression language - development library)
libclassad8 (HTCondor classads expression language - runtime library)

connectome-workbench

connectome-workbench (brain visualization, analysis and discovery tool)
connectome-workbench-dbg (brain visualization, analysis and discovery tool – debug symbols)

convert3d

convert3d (tool(s) for converting 3D images between common file formats)

copyq

copyq (Advanced clipboard manager with editing and scripting features)
copyq-doc (Documentation and examples for CopyQ - HTML format)
copyq-plugins (Plugins for CopyQ)

datalad

datalad (data files management and distribution platform)
python3-datalad (data files management and distribution platform)

datalad-container

datalad-container (DataLad extension for working with containerized environments)

dcm2niix

dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack

python3-dcmstack (DICOM to NIfTI conversion - python3 package)

debhelper

debhelper (helper programs for debian/rules)
libdebhelper-perl (debhelper perl modules)

dh-octave

dh-octave (Debhelper-based infrastructure for building Octave add-on packages)
dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)

dipy

python-dipy (Python library for the analysis of diffusion MRI datasets)
python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

diskcache

python3-diskcache (Python module for Disk and file backed persistent cache)

dmtcp

dmtcp (Checkpoint/Restart functionality for Linux processes)
dmtcp-dbg (Debug package for dmtcp)

duecredit

python3-duecredit (Publications (and donations) tracer)

dwz

dwz (DWARF compression tool)

edac-utils

edac-utils (report kernel-detected PCI and ECC RAM errors)
libedac-dev (report kernel-detected PCI and ECC RAM errors)
libedac1 (report kernel-detected PCI and ECC RAM errors)
libedac1-dbg (report kernel-detected PCI and ECC RAM errors)

exempi

exempi (command line tool to manipulate XMP metadata)
libexempi-dev (library to parse XMP metadata (Development files))
libexempi3 (library to parse XMP metadata (Library))

fsl

fsl (transitional dummy package)
fsl-5.0 (transitional dummy package)
fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
fsl-core (metapackage for the latest version of FSL)

fsleyes

fsleyes (FSL image viewer)

fsleyes-props

python-fsleyes-props (Python descriptor framework)

fsleyes-widgets

python-fsleyes-widgets (Python descriptor framework)

fslmeta

fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
fsl-complete (metapackage for the entire FSL suite (tools and data))

fslpy

python-fsl (FSL Python library)
python3-fsl (FSL Python library)

gifticlib

gifti-bin (tools shipped with the GIFTI library)
libgiftiio-dev (IO library for the GIFTI cortical surface data format)
libgiftiio0 (IO library for the GIFTI cortical surface data format)

git

git (fast, scalable, distributed revision control system)
git-all (fast, scalable, distributed revision control system (all subpackages))
git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
git-doc (fast, scalable, distributed revision control system (documentation))
git-el (fast, scalable, distributed revision control system (emacs support))
git-email (fast, scalable, distributed revision control system (email add-on))
git-gui (fast, scalable, distributed revision control system (GUI))
git-man (fast, scalable, distributed revision control system (manual pages))
git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
git-svn (fast, scalable, distributed revision control system (svn interoperability))
gitk (fast, scalable, distributed revision control system (revision tree visualizer))
gitweb (fast, scalable, distributed revision control system (web interface))

git-annex

git-annex-standalone (manage files with git, without checking their contents into git – standalone build)

git-annex-remote-rclone

git-annex-remote-rclone (rclone-based git annex special remote)

glm

libglm-dev (C++ library for OpenGL GLSL type-based mathematics)
libglm-doc (documentation for the OpenGL Mathematics (GLM) library)

h5py

python-h5py (general-purpose Python interface to hdf5 (Python 2))
python-h5py-dbg (debug extensions for h5py (Python 2))
python-h5py-doc (documentation for h5py)
python3-h5py (general-purpose Python interface to hdf5 (Python 3))
python3-h5py-dbg (debug extensions for h5py (Python 3))

haskell-filepath-bytestring

libghc-filepath-bytestring-dev (library for manipulating RawFilePaths)
libghc-filepath-bytestring-doc (library for manipulating RawFilePaths; documentation)
libghc-filepath-bytestring-prof (library for manipulating RawFilePaths; profiling libraries)

hdmf

python3-hdmf (Hierarchical Data Modeling Framework)

heudiconv

heudiconv (DICOM converter with support for structure heuristics)

importlib-resources

python3-importlib-resources (Read resources from Python packages)

impressive

impressive (PDF presentation tool with eye candies)

indexed-gzip

python-indexed-gzip (fast random access of gzip files in Python)
python3-indexed-gzip (fast random access of gzip files in Python)

joblib

python-joblib (tools to provide lightweight pipelining in Python)
python3-joblib (tools to provide lightweight pipelining in Python)

json-tricks

pypy-json-tricks (Python module with extra features for JSON files)
python-json-tricks (Python module with extra features for JSON files)
python3-json-tricks (Python module with extra features for JSON files)

libfreenect

freenect (library for accessing Kinect device – metapackage)
libfreenect-bin (library for accessing Kinect device – utilities and samples)
libfreenect-demos (library for accessing Kinect device – dummy package)
libfreenect-dev (library for accessing Kinect device – development files)
libfreenect-doc (library for accessing Kinect device – documentation)
libfreenect0.5 (library for accessing Kinect device)

libgdf

gdf-tools (IO library for the GDF – helper tools)
libgdf-dev (IO library for the GDF – development library)
libgdf0 (IO library for the GDF (general dataformat for biosignals))
matlab-gdf (IO library for the GDF – Matlab interface)
octave-gdf (IO library for the GDF – Octave interface)

libqtpas

libqt5pas-dev (Development files for Qt5Pas)
libqt5pas1 (Qt5 interface bindings for Pascal)

mrtrix

mrtrix (diffusion-weighted MRI white matter tractography)
mrtrix-doc (documentation for mrtrix)

mrtrix3

mrtrix3 (diffusion-weighted MRI white matter tractography)
mrtrix3-doc (documentation for mrtrix3)

msgpack-python

python-msgpack (Python implementation of MessagePack format)
python3-msgpack (Python 3 implementation of MessagePack format)

mutagen

python-mutagen (audio metadata editing library)
python-mutagen-doc (audio metadata editing library - documentation)
python3-mutagen (audio metadata editing library (Python 3))

ncdu

ncdu (ncurses disk usage viewer)

neo

python3-neo (Python IO library for electrophysiological data formats)

neurodebian

neurodebian (neuroscience-oriented distribution - repository configuration)
neurodebian-archive-keyring (neuroscience-oriented distribution - GnuPG archive keys)
neurodebian-desktop (neuroscience-oriented distribution - desktop integration)
neurodebian-dev (neuroscience-oriented distribution - development tools)
neurodebian-freeze (nd_freeze tool to freeze APT sources to use snapshots)
neurodebian-popularity-contest (neuroscience-oriented distribution - popcon integration)

nibabel

python-nibabel-doc (documentation for NiBabel)
python3-nibabel (Python3 bindings to various neuroimaging data formats)

nipy

python-nipy-doc (documentation and examples for NiPy)
python3-nipy (Analysis of structural and functional neuroimaging data)
python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipype

python-nipype-doc (Neuroimaging data analysis pipelines in Python3 – documentation)
python3-nipype (Neuroimaging data analysis pipelines in Python3)

nitime

python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
python3-nitime (timeseries analysis for neuroscience data (nitime))

nuitka

nuitka (Python compiler with full language support and CPython compatibility)

numexpr

python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)

openpyxl

python-openpyxl (Python module to read/write OpenXML xlsx/xlsm files)
python3-openpyxl (Python 3 module to read/write OpenXML xlsx/xlsm files)

openstack-pkg-tools

openstack-pkg-tools (Tools and scripts for building Openstack packages in Debian)

openxr-sdk-source

libopenxr-dev (OpenXR software development kit – development headers)
libopenxr-loader1 (OpenXR loader library)
libopenxr-utils (OpenXR software development kit – utilities)
openxr-layer-apidump (OpenXR software development kit – API dump layer)
openxr-layer-corevalidation (OpenXR software development kit – validation layer)

pandas

python-pandas (data structures for “relational” or “labeled” data)
python-pandas-doc (documentation and examples for pandas)
python-pandas-lib (low-level implementations and bindings for pandas)
python3-pandas (data structures for “relational” or “labeled” data - Python 3)
python3-pandas-lib (low-level implementations and bindings for pandas - Python 3)

patool

patool (command line archive file manager)

patsy

python-patsy (statistical models in Python using symbolic formulas)
python-patsy-doc (documentation and examples for patsy)
python3-patsy (statistical models in Python using symbolic formulas)

pprocess

python-pprocess (elementary parallel programming for Python)

psychopy

psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3

octave-psychtoolbox-3 (toolbox for vision research – Octave bindings)
psychtoolbox-3-common (toolbox for vision research – arch/interpreter independent part)
psychtoolbox-3-dbg (toolbox for vision research – debug symbols for binaries)
psychtoolbox-3-lib (toolbox for vision research – arch-specific parts)

psychtoolbox-3-nonfree

matlab-psychtoolbox-3 (toolbox for vision research – Matlab bindings)
matlab-psychtoolbox-3-nonfree (toolbox for vision research – Matlab binary blobs)
octave-psychtoolbox-3-nonfree (toolbox for vision research – Octave binary blobs)

pycharm-community-sloppy

pycharm-community-sloppy (PyCharm IDE (sloppy packaging))

pydicom

python-dicom (transitional package for python-pydicom)
python-pydicom (DICOM medical file reading and writing (Python 2))
python-pydicom-doc (DICOM medical file reading and writing (documentation))
python3-dicom (transitional package for python3-pydicom)
python3-pydicom (DICOM medical file reading and writing (Python 3))

pydot

python-pydot (Python interface to Graphviz’s dot)
python3-pydot (Python interface to Graphviz’s dot (Python 3))

pygithub

python3-github (Access the full Github API v3 from Python3)

pyglet

python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pymvpa2

python-mvpa2 (multivariate pattern analysis with Python v. 2)
python-mvpa2-doc (documentation and examples for PyMVPA v. 2)
python-mvpa2-lib (low-level implementations and bindings for PyMVPA v. 2)

pynwb

python3-pynwb (Python library for working with Neurodata in the NWB format)

pyrsistent

python3-pyrsistent (persistent/functional/immutable data structures for Python)

python-argcomplete

python3-argcomplete (bash tab completion for argparse (for Python 3))

python-babel

python-babel (tools for internationalizing Python applications - Python 2.x)
python-babel-doc (tools for internationalizing Python applications - documentation)
python-babel-localedata (tools for internationalizing Python applications - locale data files)
python3-babel (tools for internationalizing Python applications - Python 3.x)

python-boto

python-boto (Python interface to Amazon’s Web Services - Python 2.x)
python3-boto (Python interface to Amazon’s Web Services - Python 3.x)

python-bz2file

python-bz2file (Python library for reading and writing bzip2-compressed files)
python3-bz2file (Python3 library for reading and writing bzip2-compressed files)

python-deprecation

python-deprecation (Library to handle automated deprecations - Python 2.x)
python3-deprecation (Library to handle automated deprecations - Python 3.x)

python-distro

python3-distro (Linux OS platform information API)

python-etelemetry

python3-etelemetry (lightweight Python3 client to communicate with the etelemetry server)

python-exif

python-exif (Python library to extract Exif data from TIFF and JPEG files)
python3-exif (Python library to extract Exif data from TIFF and JPEG files)

python-fasteners

python3-fasteners (provides useful locks - Python 3.x)

python-filelock

python-filelock (platform independent file locking module (Python 2))
python3-filelock (platform independent file locking module (Python 3))

python-git

python-git-doc (Python library to interact with Git repositories - docs)
python3-git (Python library to interact with Git repositories - Python 3.x)

python-gitdb

python-gitdb (pure-Python git object database (Python 2))
python3-gitdb (pure-Python git object database (Python 3))

python-httpretty

python3-httpretty (HTTP client mock - Python 3.x)

python-hypothesis

pypy-hypothesis (advanced Quickcheck style testing library for PyPy)
python-hypothesis (advanced Quickcheck style testing library for Python 2)
python-hypothesis-doc (advanced Quickcheck style testing library (documentation))
python3-hypothesis (advanced Quickcheck style testing library for Python 3)

python-importlib-metadata

python3-importlib-metadata (library to access the metadata for a Python package - Python 3.x)

python-jsonschema

python-jsonschema-doc (An(other) implementation of JSON Schema (Draft 3 and 4) - doc)
python3-jsonschema (An(other) implementation of JSON Schema (Draft 3 and 4) - Python 3.x)

python-monotonic

python-monotonic (implementation of time.monotonic() - Python 2.x)
python3-monotonic (implementation of time.monotonic() - Python 3.x)

python-pyfakefs

python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)

python-pyperclip

python-pyperclip (Cross-platform clipboard module for Python)
python3-pyperclip (Cross-platform clipboard module for Python3)

python-quantities

python3-quantities (Library for computation of physical quantities with units, based on numpy)

python-rpaths

python-rpaths-doc (documentation for rpaths)
python3-rpaths (cross-platform path manipulation library for Python)

python-sphinxcontrib.apidoc

python3-sphinxcontrib.apidoc (Sphinx extension for running ‘sphinx-apidoc’ on each build - Python 3.x)

python-typing-extensions

python3-typing-extensions (Backported and Experimental Type Hints for Python)

python-whoosh

python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))

python-wrapt

python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)

python-xmp-toolkit

python3-libxmp (Python3 library for XMP metadata)
python3-libxmp-doc (Python library for XMP metadata - documentation)

python-zipp

python3-zipp (pathlib-compatible Zipfile object wrapper - Python 3.x)

pyxid

python3-pyxid (interface for Cedrus XID and StimTracker devices)

rclone

golang-github-ncw-rclone-dev (go source code of rclone)
rclone (rsync for commercial cloud storage)

remake

remake (GNU make fork with improved error reporting and debugging)

reprozip

python3-reprozip (modules for the ReproZip packer)
python3-reprozip-dbg (debug extensions for the ReproZip packer)
reprozip (tool for reproducing scientific experiments (packer))

s3cmd

s3cmd (command-line Amazon S3 client)

scikit-learn

python-sklearn (Python modules for machine learning and data mining)
python-sklearn-doc (documentation and examples for scikit-learn)
python-sklearn-lib (low-level implementations and bindings for scikit-learn)
python3-sklearn (Python modules for machine learning and data mining - Python 3)
python3-sklearn-lib (low-level implementations and bindings for scikit-learn - Python 3)

setuptools-scm

python-setuptools-scm (blessed package to manage your versions by scm tags for Python 2)
python3-setuptools-scm (blessed package to manage your versions by scm tags for Python 3)

singularity-container

singularity-container (container platform focused on supporting “Mobility of Compute”)

six

pypy-six (Python 2 and 3 compatibility library (PyPy interface))
python-six (Python 2 and 3 compatibility library (Python 2 interface))
python3-six (Python 2 and 3 compatibility library (Python 3 interface))

skimage

python-skimage (Python modules for image processing)
python-skimage-doc (Documentation and examples for scikit-image)
python-skimage-lib (Optimized low-level algorithms for scikit-image)
python3-skimage (Python 3 modules for image processing)
python3-skimage-lib (Optimized low-level algorithms for Python 3 scikit-image)

sphinx-gallery

python-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts)
python-sphinx-gallery-doc (extension that builds an HTML gallery of examples from Python scripts (Doc))
python3-sphinx-gallery (extension that builds an HTML gallery of examples from Python scripts (Python 3))

statsmodels

python-statsmodels (Python module for the estimation of statistical models)
python-statsmodels-doc (documentation and examples for statsmodels)
python-statsmodels-lib (low-level implementations and bindings for statsmodels)
python3-statsmodels (Python3 module for the estimation of statistical models)
python3-statsmodels-lib (Python3 low-level implementations and bindings for statsmodels)

stimfit

python-stfio (Python module to read common electrophysiology file formats.)
stimfit (Program for viewing and analyzing electrophysiological data)
stimfit-dbg (Debug symbols for stimfit)

svgtune

svgtune (tool to generate a set of .svg files out of a single .svg file)

sympy

isympy-common (Python shell for SymPy)
isympy3 (Python3 shell for SymPy)
python-sympy (Computer Algebra System (CAS) in Python)
python-sympy-doc (Computer Algebra System (CAS) in Python - Documentation)
python3-sympy (Computer Algebra System (CAS) in Python (Python3))

vowpal-wabbit

libvw-dev (fast and scalable online machine learning algorithm - development files)
libvw0 (fast and scalable online machine learning algorithm - dynamic library)
vowpal-wabbit (fast and scalable online machine learning algorithm)
vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)

xlwt

python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)

youtube-dl

youtube-dl (downloader of videos from YouTube and other sites)

Packages for Debian GNU/Linux 10.0 (buster)¶

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