Packages for Debian GNU/Linux 10.0 (buster)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)
  • afni-common (miscellaneous scripts and data files for AFNI)
  • afni-dbg (debug symbols for AFNI)
  • afni-dev (header and static libraries for AFNI plugin development)
afni-data
annexremote
asciidoctor
bats
  • bats (bash automated testing system)
btrbk
  • btrbk (backup tool for btrfs subvolumes)
chardet
condor
  • htcondor (distributed workload management system)
  • htcondor-dbg (distributed workload management system - debugging symbols)
  • htcondor-dev (distributed workload management system - development files)
  • htcondor-doc (distributed workload management system - documentation)
  • libclassad-dev (HTCondor classads expression language - development library)
  • libclassad8 (HTCondor classads expression language - runtime library)
connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)
copyq
  • copyq (Advanced clipboard manager with editing and scripting features)
  • copyq-doc (Documentation and examples for CopyQ - HTML format)
  • copyq-plugins (Plugins for CopyQ)
datalad
  • datalad (data files management and distribution platform)
  • python3-datalad (data files management and distribution platform)
datalad-container
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)
dcmstack
debhelper
dh-octave
  • dh-octave (Debhelper-based infrastructure for building Octave add-on packages)
  • dh-octave-autopkgtest (script for the automatic testing of Octave add-on packages)
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)
  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)
  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)
diskcache
dmtcp
  • dmtcp (Checkpoint/Restart functionality for Linux processes)
  • dmtcp-dbg (Debug package for dmtcp)
duecredit
dwz
  • dwz (DWARF compression tool)
edac-utils
  • edac-utils (report kernel-detected PCI and ECC RAM errors)
  • libedac-dev (report kernel-detected PCI and ECC RAM errors)
  • libedac1 (report kernel-detected PCI and ECC RAM errors)
  • libedac1-dbg (report kernel-detected PCI and ECC RAM errors)
exempi
  • exempi (command line tool to manipulate XMP metadata)
  • libexempi-dev (library to parse XMP metadata (Development files))
  • libexempi3 (library to parse XMP metadata (Library))
fsl
  • fsl (transitional dummy package)
  • fsl-5.0 (transitional dummy package)
  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)
  • fsl-core (metapackage for the latest version of FSL)
fsleyes
fsleyes-props
fsleyes-widgets
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))
  • fsl-complete (metapackage for the entire FSL suite (tools and data))
fslpy
gifticlib
  • gifti-bin (tools shipped with the GIFTI library)
  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)
  • libgiftiio0 (IO library for the GIFTI cortical surface data format)
git
  • git (fast, scalable, distributed revision control system)
  • git-all (fast, scalable, distributed revision control system (all subpackages))
  • git-cvs (fast, scalable, distributed revision control system (cvs interoperability))
  • git-daemon-run (fast, scalable, distributed revision control system (git-daemon service))
  • git-daemon-sysvinit (fast, scalable, distributed revision control system (git-daemon service))
  • git-doc (fast, scalable, distributed revision control system (documentation))
  • git-el (fast, scalable, distributed revision control system (emacs support))
  • git-email (fast, scalable, distributed revision control system (email add-on))
  • git-gui (fast, scalable, distributed revision control system (GUI))
  • git-man (fast, scalable, distributed revision control system (manual pages))
  • git-mediawiki (fast, scalable, distributed revision control system (MediaWiki remote helper))
  • git-svn (fast, scalable, distributed revision control system (svn interoperability))
  • gitk (fast, scalable, distributed revision control system (revision tree visualizer))
  • gitweb (fast, scalable, distributed revision control system (web interface))
git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)
git-annex-remote-rclone
glm
  • libglm-dev (C++ library for OpenGL GLSL type-based mathematics)
  • libglm-doc (documentation for the OpenGL Mathematics (GLM) library)
h5py
haskell-filepath-bytestring
hdmf
heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)
importlib-resources
impressive
  • impressive (PDF presentation tool with eye candies)
indexed-gzip
joblib
json-tricks
libfreenect
libgdf
  • gdf-tools (IO library for the GDF – helper tools)
  • libgdf-dev (IO library for the GDF – development library)
  • libgdf0 (IO library for the GDF (general dataformat for biosignals))
  • matlab-gdf (IO library for the GDF – Matlab interface)
  • octave-gdf (IO library for the GDF – Octave interface)
libqtpas
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)
  • mrtrix-doc (documentation for mrtrix)
mrtrix3
  • mrtrix3 (diffusion-weighted MRI white matter tractography)
  • mrtrix3-doc (documentation for mrtrix3)
msgpack-python
mutagen
ncdu
  • ncdu (ncurses disk usage viewer)
neo
  • python3-neo (Python IO library for electrophysiological data formats)
neurodebian
nibabel
nipy
  • python-nipy-doc (documentation and examples for NiPy)
  • python3-nipy (Analysis of structural and functional neuroimaging data)
  • python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))
  • python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))
nipype
nitime
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)
  • python3-nitime (timeseries analysis for neuroscience data (nitime))
nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)
numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)
  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)
openpyxl
openstack-pkg-tools
openxr-sdk-source
pandas
patool
  • patool (command line archive file manager)
patsy
pprocess
psychopy
  • psychopy (environment for creating psychology stimuli in Python)
psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydicom
pydot
pygithub
pyglet
  • python3-pyglet (cross-platform windowing and multimedia library (Python 3))
pymvpa2
pynwb
  • python3-pynwb (Python library for working with Neurodata in the NWB format)
pyrsistent
python-argcomplete
python-babel
  • python-babel (tools for internationalizing Python applications - Python 2.x)
  • python-babel-doc (tools for internationalizing Python applications - documentation)
  • python-babel-localedata (tools for internationalizing Python applications - locale data files)
  • python3-babel (tools for internationalizing Python applications - Python 3.x)
python-boto
  • python-boto (Python interface to Amazon’s Web Services - Python 2.x)
  • python3-boto (Python interface to Amazon’s Web Services - Python 3.x)
python-bz2file
  • python-bz2file (Python library for reading and writing bzip2-compressed files)
  • python3-bz2file (Python3 library for reading and writing bzip2-compressed files)
python-deprecation
python-distro
python-etelemetry
  • python3-etelemetry (lightweight Python3 client to communicate with the etelemetry server)
python-exif
  • python-exif (Python library to extract Exif data from TIFF and JPEG files)
  • python3-exif (Python library to extract Exif data from TIFF and JPEG files)
python-fasteners
python-filelock
python-git
  • python-git-doc (Python library to interact with Git repositories - docs)
  • python3-git (Python library to interact with Git repositories - Python 3.x)
python-gitdb
python-httpretty
python-hypothesis
python-importlib-metadata
python-jsonschema
python-monotonic
python-pyfakefs
  • python3-pyfakefs (fake fs that mocks the Python file system modules - Python 3)
python-pyperclip
python-quantities
  • python3-quantities (Library for computation of physical quantities with units, based on numpy)
python-rpaths
python-sphinxcontrib.apidoc
python-typing-extensions
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))
  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))
  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))
python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)
  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)
  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)
python-xmp-toolkit
python-zipp
  • python3-zipp (pathlib-compatible Zipfile object wrapper - Python 3.x)
pyxid
  • python3-pyxid (interface for Cedrus XID and StimTracker devices)
rclone
remake
  • remake (GNU make fork with improved error reporting and debugging)
reprozip
s3cmd
  • s3cmd (command-line Amazon S3 client)
scikit-learn
setuptools-scm
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))
  • python-six (Python 2 and 3 compatibility library (Python 2 interface))
  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))
skimage
sphinx-gallery
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)
  • stimfit (Program for viewing and analyzing electrophysiological data)
  • stimfit-dbg (Debug symbols for stimfit)
svgtune
  • svgtune (tool to generate a set of .svg files out of a single .svg file)
sympy
vowpal-wabbit
  • libvw-dev (fast and scalable online machine learning algorithm - development files)
  • libvw0 (fast and scalable online machine learning algorithm - dynamic library)
  • vowpal-wabbit (fast and scalable online machine learning algorithm)
  • vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)
  • vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)
xlwt
  • python-xlwt (module for writing Microsoft Excel spreadsheet files - Python 2.7)
  • python-xlwt-doc (module for writing Microsoft Excel spreadsheet files - doc)
  • python3-xlwt (module for writing Microsoft Excel spreadsheet files - Python 3.x)
youtube-dl
  • youtube-dl (downloader of videos from YouTube and other sites)

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