Packages for Ubuntu 16.04 “Xenial Xerus” (xenial)

afni
  • afni (toolkit for analyzing and visualizing functional MRI data)

  • afni-common (miscellaneous scripts and data files for AFNI)

  • afni-dbg (debug symbols for AFNI)

  • afni-dev (header and static libraries for AFNI plugin development)

afni-data
aghermann
  • aghermann (Sleep-research experiment manager)

ants
  • ants (advanced normalization tools for brain and image analysis)

asciidoctor
bats
  • bats (bash automated testing system)

btrbk
  • btrbk (backup tool for btrfs subvolumes)

cde
  • cde (package everything required to execute a Linux command on another computer)

chardet
cmtk
  • cmtk (Computational Morphometry Toolkit)

cnrun
  • cnrun-tools (NeuroML-capable neuronal network simulator (tools))

  • libcnrun2 (NeuroML-capable neuronal network simulator (shared lib))

  • libcnrun2-dev (NeuroML-capable neuronal network simulator (development files))

  • lua-cnrun (NeuroML-capable neuronal network simulator (Lua package))

condor
  • htcondor (distributed workload management system)

  • htcondor-dbg (distributed workload management system - debugging symbols)

  • htcondor-dev (distributed workload management system - development files)

  • htcondor-doc (distributed workload management system - documentation)

  • libclassad-dev (HTCondor classads expression language - development library)

  • libclassad8 (HTCondor classads expression language - runtime library)

connectome-workbench
convert3d
  • convert3d (tool(s) for converting 3D images between common file formats)

copyq
  • copyq (Advanced clipboard manager with editing and scripting features)

  • copyq-doc (Documentation and examples for CopyQ - HTML format)

  • copyq-plugins (Plugins for CopyQ)

datalad
  • datalad (data files management and distribution platform)

  • python3-datalad (data files management and distribution platform)

datalad-container
dcm2niix
  • dcm2niix (converts DICOM and PAR/REC files into the NIfTI format)

dcmstack
debhelper
debruijn
dipy
  • python-dipy (Python library for the analysis of diffusion MRI datasets)

  • python-dipy-doc (Python library for the analysis of diffusion MRI datasets – documentation)

  • python-dipy-lib (Python library for the analysis of diffusion MRI datasets – extensions)

diskcache
docker-compose
  • docker-compose (Punctual, lightweight development environments using Docker)

dockerpty
drawtk
  • libdrawtk-dev (Library to simple and efficient 2D drawings (development files))

  • libdrawtk0 (Library to simple and efficient 2D drawings)

  • libdrawtk0-dbg (Library to simple and efficient 2D drawings (debugging symbols))

duecredit
dwz
  • dwz (DWARF compression tool)

eeglab11
fail2ban
  • fail2ban (ban hosts that cause multiple authentication errors)

fsl
  • fsl (transitional dummy package)

  • fsl-5.0 (transitional dummy package)

  • fsl-5.0-core (analysis tools for FMRI, MRI and DTI brain imaging)

  • fsl-core (metapackage for the latest version of FSL)

fsl-eddy-nonfree
fsleyes
fsleyes-props
fsleyes-widgets
fslmeta
  • fsl-5.0-complete (metapackage for the entire FSL suite (tools and data))

  • fsl-complete (metapackage for the entire FSL suite (tools and data))

fslpy
fslview
gcalcli
  • gcalcli (Google Calendar Command Line Interface)

gifticlib
  • gifti-bin (tools shipped with the GIFTI library)

  • libgiftiio-dev (IO library for the GIFTI cortical surface data format)

  • libgiftiio0 (IO library for the GIFTI cortical surface data format)

git-annex
  • git-annex-standalone (manage files with git, without checking their contents into git – standalone build)

git-annex-adapter
git-annex-metadata-gui
git-annex-remote-rclone
git-hub
  • git-hub (Git command line interface to GitHub)

heudiconv
  • heudiconv (DICOM converter with support for structure heuristics)

impressive
  • impressive (PDF presentation tool with eye candies)

incf-nidash-oneclick
indexed-gzip
ismrmrd
jasp
  • jasp (Bayesian statistics made accessible)

joblib
json-tricks
lda
  • python-lda (Topic modeling with latent Dirichlet allocation for Python 3)

  • python3-lda (Topic modeling with latent Dirichlet allocation)

libfreenect
melview
  • fsl-melview (viewer for the output of FSL’s MELODIC)

mialmpick
  • mialmpick (Tools for landmark picking in 3D volume data sets)

  • mialmpick-dbg (Debug information landmark picking tool mialmpick)

mridefacer
mrtrix
  • mrtrix (diffusion-weighted MRI white matter tractography)

  • mrtrix-doc (documentation for mrtrix)

mrtrix3
  • mrtrix3 (diffusion-weighted MRI white matter tractography)

  • mrtrix3-doc (documentation for mrtrix3)

mutagen
ncdu
  • ncdu (ncurses disk usage viewer)

netselect
  • netselect (speed tester for choosing a fast network server)

  • netselect-apt (speed tester for choosing a fast Debian mirror)

neurodebian
neurosynth
nibabel
nilearn
  • python-nilearn (fast and easy statistical learning on neuroimaging data (Python 2))

  • python3-nilearn (fast and easy statistical learning on neuroimaging data (Python 3))

nipy
  • python-nipy-doc (documentation and examples for NiPy)

  • python3-nipy (Analysis of structural and functional neuroimaging data)

  • python3-nipy-lib (Analysis of structural and functional neuroimaging data (compiled modules))

  • python3-nipy-lib-dbg (Analysis of structural and functional neuroimaging data (debug symbols))

nipype
nitime
  • python-nitime-doc (timeseries analysis for neuroscience data (nitime) – documentation)

  • python3-nitime (timeseries analysis for neuroscience data (nitime))

nuitka
  • nuitka (Python compiler with full language support and CPython compatibility)

numdiff
  • numdiff (Compare similar files with numeric fields)

numexpr
  • python-numexpr (Fast numerical array expression evaluator for Python and NumPy)

  • python3-numexpr (Fast numerical array expression evaluator for Python 3 and NumPy)

openpyxl
openstack-pkg-tools
p7zip
  • p7zip (7zr file archiver with high compression ratio)

  • p7zip-full (7z and 7za file archivers with high compression ratio)

pandas
patool
  • patool (command line archive file manager)

patsy
pprocess
props
psychopy
  • psychopy (environment for creating psychology stimuli in Python)

psychtoolbox-3
psychtoolbox-3-nonfree
pycharm-community-sloppy
pydot
pyepl
pygithub
pyglet
  • python3-pyglet (cross-platform windowing and multimedia library (Python 3))

pymvpa2
pyopengl
pysurfer
pytest
pytest-runner
python-argcomplete
python-babel
  • python-babel (tools for internationalizing Python applications - Python 2.x)

  • python-babel-doc (tools for internationalizing Python applications - documentation)

  • python-babel-localedata (tools for internationalizing Python applications - locale data files)

  • python3-babel (tools for internationalizing Python applications - Python 3.x)

python-boto
  • python-boto (Python interface to Amazon’s Web Services - Python 2.x)

  • python3-boto (Python interface to Amazon’s Web Services - Python 3.x)

python-boto3
  • python-boto3 (Python interface to Amazon’s Web Services - Python 2.x)

  • python3-boto3 (Python interface to Amazon’s Web Services - Python 3.x)

python-bz2file
  • python-bz2file (Python library for reading and writing bzip2-compressed files)

  • python3-bz2file (Python3 library for reading and writing bzip2-compressed files)

python-click
  • python-click (Simple wrapper around optparse for powerful command line utilities - Python 2.7)

  • python3-click (Simple wrapper around optparse for powerful command line utilities - Python 3.x)

python-deprecation
python-docker
  • python-docker (Python wrapper to access docker.io’s control socket)

  • python3-docker (Python 3 wrapper to access docker.io’s control socket)

python-exif
  • python-exif (Python library to extract Exif data from TIFF and JPEG files)

  • python3-exif (Python library to extract Exif data from TIFF and JPEG files)

python-fasteners
python-funcsigs
python-git
  • python-git-doc (Python library to interact with Git repositories - docs)

  • python3-git (Python library to interact with Git repositories - Python 3.x)

python-gitdb
python-httpretty
python-hypothesis
python-jsmin
  • python-jsmin (JavaScript minifier written in Python - Python 2.x)

  • python3-jsmin (JavaScript minifier written in Python - Python 3.x)

python-mne
  • python-mne (Python modules for MEG and EEG data analysis)

python-monotonic
python-prov
python-py
  • pypy-py (Advanced Python development support library (PyPy))

  • python-py (Advanced Python development support library (Python 2))

  • python3-py (Advanced Python development support library (Python 3))

python-pydotplus
python-pygraphviz
  • python-pygraphviz (Python interface to the Graphviz graph layout and visualization package)

  • python-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (debug extension))

  • python-pygraphviz-doc (Python interface to the Graphviz graph layout and visualization package (doc))

  • python3-pygraphviz (Python interface to the Graphviz graph layout and visualization package (Python 3))

  • python3-pygraphviz-dbg (Python interface to the Graphviz graph layout and visualization package (py3k debug extension))

python-pyperclip
python-setuptools
python-smmap
  • python-smmap (pure Python implementation of a sliding window memory map manager)

  • python3-smmap (pure Python implementation of a sliding window memory map manager)

python-urllib3
python-whoosh
  • python-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 2))

  • python-whoosh-doc (full-text indexing, search, and spell checking library (doc))

  • python3-whoosh (pure-Python full-text indexing, search, and spell checking library (Python 3))

python-wrapt
  • python-wrapt (decorators, wrappers and monkey patching. - Python 2.x)

  • python-wrapt-doc (decorators, wrappers and monkey patching. - doc)

  • python3-wrapt (decorators, wrappers and monkey patching. - Python 3.x)

python-xmp-toolkit
rclone
remake
  • remake (GNU make fork with improved error reporting and debugging)

requests
  • python-requests (elegant and simple HTTP library for Python2, built for human beings)

  • python-requests-whl (elegant and simple HTTP library for Python, built for human beings)

  • python3-requests (elegant and simple HTTP library for Python3, built for human beings)

scikit-learn
seaborn
singularity-container
six
  • pypy-six (Python 2 and 3 compatibility library (PyPy interface))

  • python-six (Python 2 and 3 compatibility library (Python 2 interface))

  • python3-six (Python 2 and 3 compatibility library (Python 3 interface))

solar-eclipse
sparql-wrapper-python
sphinx-gallery
spm8
statsmodels
stimfit
  • python-stfio (Python module to read common electrophysiology file formats.)

  • stimfit (Program for viewing and analyzing electrophysiological data)

  • stimfit-dbg (Debug symbols for stimfit)

tqdm
  • python-tqdm (fast, extensible progress bar for Python 2)

  • python3-tqdm (fast, extensible progress bar for Python 3 and CLI tool)

ubuntu-keyring
uftp
  • uftp (Encrypted multicast file transfer program)

utopia-documents
vcr.py
  • python-vcr (record and replay HTML interactions (Python library))

  • python3-vcr (record and replay HTML interactions (Python3 library))

vmri-nonfree
vowpal-wabbit
  • libvw-dev (fast and scalable online machine learning algorithm - development files)

  • libvw0 (fast and scalable online machine learning algorithm - dynamic library)

  • vowpal-wabbit (fast and scalable online machine learning algorithm)

  • vowpal-wabbit-dbg (fast and scalable online machine learning algorithm - debug files)

  • vowpal-wabbit-doc (fast and scalable online machine learning algorithm - documentation)

vrpn
  • libvrpn-dev (Virtual Reality Peripheral Network (development files))

  • libvrpn0 (Virtual Reality Peripheral Network (client library))

  • libvrpnserver0 (Virtual Reality Peripheral Network (server library))

  • vrpn (Virtual Reality Peripheral Network (executables))

  • vrpn-dbg (Virtual Reality Peripheral Network (debugging symbols))

vtk-dicom
youtube-dl
  • youtube-dl (downloader of videos from YouTube and other sites)

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